GENCODE is a scientific project in genome research and part of the ENCODE (ENCyclopedia Of DNA Elements) scale-up project. The GENCODE consortium was initially...
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In 2013, UCSC partnered with the GENCODE project to adopt its high-quality gene annotations. In 2015, the GENCODE gene set (GRCh38/hg38 assembly) replaced...
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Markup language (section GenCode)
device. In the 1970s, Tunnicliffe led the development of a standard called GenCode for the publishing industry and later was the first chairman of the International...
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1186/s13073-017-0441-1. PMC 5448149. PMID 28558813. Harrow, J.; et al. (September 2012). "GENCODE: the reference human genome annotation for The ENCODE Project". Genome...
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format. In the 1970s, Tunnicliffe led the development of a standard called GenCode for the publishing industry. He served as the first chair of the International...
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Hubbard, TJ; Notredame, C; Harrow, J; Guigó, R (September 2012). "The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure...
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effort to describe different cancer tumour types. It is also part of the GENCODE and ENCODE research programmes to create an encyclopaedia of DNA elements...
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genes however that estimate has fallen to about 19,000 with the ongoing GENCODE annotation project. The number of noncoding genes is not known with certainty...
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comprehensive map of conserved elements in the human genome, the ENCODE, GENCODE, and modENCODE projects to characterize the genes, non-coding elements...
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au/show/unit/YYYYMMDD/YYYYMMDD/?k1=GENCODE[permanent dead link] where YYYYMMDD are start and end dates and GENCODE is one of BW01, BW02, BW03, or BW04...
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code re-use easy. Gencode Scripts: The gencode-remote script is the main way to actually update the configuration of target nodes. gencode-remote runs on...
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Frankish A, Howald C, Habegger L, Mu XJ, et al. (September 2012). "The GENCODE pseudogene resource". Genome Biology. 13 (9): R51. doi:10.1186/gb-2012-13-9-r51...
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Sisu C, Frankish A, Howald C, Habegger L, Mu XJ, et al. (2012). "The GENCODE pseudogene resource". Genome Biology. 13 (9): R51. doi:10.1186/gb-2012-13-9-r51...
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Diekhans M, Kokocinski F, Aken BL, Barrell D, Zadissa A, Searle S (2012). "GENCODE: the reference human genome annotation for The ENCODE Project". Genome...
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Rossier, C; Ucla, C; Hubbard, T; Antonarakis, S. E.; Guigo, R (2006). "GENCODE: Producing a reference annotation for ENCODE". Genome Biology. 7 (Suppl...
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Fight for Ratios and Editions]. Bertelsmann. 2001. ISBN 978-3-570-00199-8. Gencode J: Roman [Gene Code J.]. Eichborn. 2001. ISBN 978-3-8218-0860-4. Marktplatz...
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section of CCDS sequence data. The CCDS dataset is an integral part of the GENCODE gene annotation project and it is used as a standard for high-quality coding...
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the differences in transcripts annotation between RefSeq and Ensembl/GENCODE annotation systems are reduced. A MANE Select transcripts set are created...
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relevance, the complexity of these foci frustrates easy evaluation. The GENCODE consortium has collated and analysed a comprehensive set of human lncRNA...
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genomes) No (Optimized for Knockout) Yes 3 Yes NGG Yes (RefSeq, Ensembl, Gencode) Yes TUSCAN CSIRO No No No 0 Yes NGG No Yes VARSCOT CSIRO Yes Yes No 0-8...
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regions and the distance and orientation preferences between motif sites. GENCODE SIMAP Functional genomics Human Genome Project 1000 Genomes Project International...
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Center) EcoCyc Ensembl Europe PMC European Nucleotide Archive (ENA) FlyBase GENCODE Gene Ontology (GO) Global Biodiversity Information Facility (GBIF) Genome...
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of the data sources for each annotation type: UCSC/Ensembl genes hg38 GENCODE/CCDS ENCODE Custom-made databases conforming to GFF3 (Generic Feature Format...
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annotation: Encyclopedia of DNA elements (ENCODE) Entrez Gene Ensembl FlyBase GENCODE Gene Ontology Consortium GeneRIF Mouse Genome Informatics RefSeq Uniprot...
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NNB Generation Company (NNB GenCo), a subsidiary of EDF Energy in the UK GENCODE Gen Con This disambiguation page lists articles associated with the title...
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transcript annotations from different databases (Mirbase, GtRNAdb and Gencode). Small RNA sequencing can be useful for: studying the expression profile...
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protein is generated from Chromosome 1: 176,861,067-177,164,712 and the Gencode Gene: ENSG00000152092.16 with a base pair size of 303,646 and total Exon...
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played significant roles in large-scale consortium sequencing projects like GENCODE, the Vertebrate Genome Project, Pan-Cancer Initiative, Human Cell Atlas...
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PMC 8534260. PMID 34680261. "Human Gene DIRAS1 (ENST00000323469.5) from GENCODE V44". "Di-Ras, a Distinct Subgroup of Ras Family GTPases with Unique Biochemical...
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T; Chrast, J; Walters, N; Balasubramanian, S; Pei, B; et al. (2012). "GENCODE: The reference human genome annotation for the ENCODE Project". Genome...
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