GENCODE is a scientific project in genome research and part of the ENCODE (ENCyclopedia Of DNA Elements) scale-up project. The GENCODE consortium was initially...
33 KB (2,646 words) - 21:31, 12 May 2025
In 2013, UCSC partnered with the GENCODE project to adopt its high-quality gene annotations. In 2015, the GENCODE gene set (GRCh38/hg38 assembly) replaced...
45 KB (3,807 words) - 23:09, 28 April 2025
Markup language (section GenCode)
device. In the 1970s, Tunnicliffe led the development of a standard called GenCode for the publishing industry and later was the first chairman of the International...
30 KB (3,741 words) - 17:02, 14 May 2025
1186/s13073-017-0441-1. PMC 5448149. PMID 28558813. Harrow, J.; et al. (September 2012). "GENCODE: the reference human genome annotation for The ENCODE Project". Genome...
170 KB (18,988 words) - 06:42, 25 May 2025
Hubbard, TJ; Notredame, C; Harrow, J; Guigó, R (September 2012). "The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure...
13 KB (1,522 words) - 13:01, 21 April 2025
format. In the 1970s, Tunnicliffe led the development of a standard called GenCode for the publishing industry. He served as the first chair of the International...
2 KB (176 words) - 20:55, 21 April 2025
effort to describe different cancer tumour types. It is also part of the GENCODE and ENCODE research programmes to create an encyclopaedia of DNA elements...
41 KB (3,943 words) - 23:51, 18 May 2025
genes however that estimate has fallen to about 19,000 with the ongoing GENCODE annotation project. The number of noncoding genes is not known with certainty...
100 KB (11,208 words) - 22:21, 21 April 2025
comprehensive map of conserved elements in the human genome, the ENCODE, GENCODE, and modENCODE projects to characterize the genes, non-coding elements...
28 KB (2,677 words) - 22:22, 15 April 2025
au/show/unit/YYYYMMDD/YYYYMMDD/?k1=GENCODE[permanent dead link] where YYYYMMDD are start and end dates and GENCODE is one of BW01, BW02, BW03, or BW04...
9 KB (808 words) - 07:19, 20 February 2025
code re-use easy. Gencode Scripts: The gencode-remote script is the main way to actually update the configuration of target nodes. gencode-remote runs on...
13 KB (1,348 words) - 22:20, 2 January 2025
Frankish A, Howald C, Habegger L, Mu XJ, et al. (September 2012). "The GENCODE pseudogene resource". Genome Biology. 13 (9): R51. doi:10.1186/gb-2012-13-9-r51...
43 KB (4,783 words) - 04:16, 25 February 2025
Sisu C, Frankish A, Howald C, Habegger L, Mu XJ, et al. (2012). "The GENCODE pseudogene resource". Genome Biology. 13 (9): R51. doi:10.1186/gb-2012-13-9-r51...
99 KB (10,102 words) - 13:33, 2 May 2025
Rossier, C; Ucla, C; Hubbard, T; Antonarakis, S. E.; Guigo, R (2006). "GENCODE: Producing a reference annotation for ENCODE". Genome Biology. 7 (Suppl...
19 KB (1,336 words) - 12:14, 17 April 2025
Diekhans M, Kokocinski F, Aken BL, Barrell D, Zadissa A, Searle S (2012). "GENCODE: the reference human genome annotation for The ENCODE Project". Genome...
42 KB (4,774 words) - 17:56, 3 November 2024
Fight for Ratios and Editions]. Bertelsmann. 2001. ISBN 978-3-570-00199-8. Gencode J: Roman [Gene Code J.]. Eichborn. 2001. ISBN 978-3-8218-0860-4. Marktplatz...
22 KB (2,368 words) - 07:59, 10 March 2025
section of CCDS sequence data. The CCDS dataset is an integral part of the GENCODE gene annotation project and it is used as a standard for high-quality coding...
28 KB (2,912 words) - 16:40, 9 October 2024
the differences in transcripts annotation between RefSeq and Ensembl/GENCODE annotation systems are reduced. A MANE Select transcripts set are created...
14 KB (1,188 words) - 02:16, 14 August 2024
relevance, the complexity of these foci frustrates easy evaluation. The GENCODE consortium has collated and analysed a comprehensive set of human lncRNA...
104 KB (11,004 words) - 23:09, 27 May 2025
genomes) No (Optimized for Knockout) Yes 3 Yes NGG Yes (RefSeq, Ensembl, Gencode) Yes TUSCAN CSIRO No No No 0 Yes NGG No Yes VARSCOT CSIRO Yes Yes No 0-8...
16 KB (1,283 words) - 21:43, 2 January 2025
regions and the distance and orientation preferences between motif sites. GENCODE SIMAP Functional genomics Human Genome Project 1000 Genomes Project International...
57 KB (6,676 words) - 16:09, 27 March 2024
Center) EcoCyc Ensembl Europe PMC European Nucleotide Archive (ENA) FlyBase GENCODE Gene Ontology (GO) Global Biodiversity Information Facility (GBIF) Genome...
5 KB (359 words) - 21:55, 7 June 2024
of the data sources for each annotation type: UCSC/Ensembl genes hg38 GENCODE/CCDS ENCODE Custom-made databases conforming to GFF3 (Generic Feature Format...
30 KB (3,454 words) - 04:02, 12 December 2023
transcript annotations from different databases (Mirbase, GtRNAdb and Gencode). Small RNA sequencing can be useful for: studying the expression profile...
14 KB (2,046 words) - 15:46, 26 February 2025
annotation: Encyclopedia of DNA elements (ENCODE) Entrez Gene Ensembl FlyBase GENCODE Gene Ontology Consortium GeneRIF Mouse Genome Informatics RefSeq Uniprot...
66 KB (7,339 words) - 08:09, 11 November 2024
NNB Generation Company (NNB GenCo), a subsidiary of EDF Energy in the UK GENCODE Gen Con This disambiguation page lists articles associated with the title...
966 bytes (147 words) - 15:22, 30 January 2024
protein is generated from Chromosome 1: 176,861,067-177,164,712 and the Gencode Gene: ENSG00000152092.16 with a base pair size of 303,646 and total Exon...
9 KB (1,158 words) - 21:57, 1 August 2024
played significant roles in large-scale consortium sequencing projects like GENCODE, the Vertebrate Genome Project, Pan-Cancer Initiative, Human Cell Atlas...
10 KB (1,046 words) - 20:45, 8 February 2025
PMC 8534260. PMID 34680261. "Human Gene DIRAS1 (ENST00000323469.5) from GENCODE V44". "Di-Ras, a Distinct Subgroup of Ras Family GTPases with Unique Biochemical...
8 KB (1,035 words) - 00:41, 5 September 2024
T; Chrast, J; Walters, N; Balasubramanian, S; Pei, B; et al. (2012). "GENCODE: The reference human genome annotation for the ENCODE Project". Genome...
32 KB (2,498 words) - 11:55, 23 May 2025