Partition function for Interacting RNAs (piRNA) is a parallel C++ package to compute joint and individual partition functions for two RNA sequences. From...

ncRNAs function by binding to other RNAs. For example, miRNAs regulate protein coding gene expression by binding to 3' UTRs, small nucleolar RNAs guide...

composed by alteRNA, for RNA density fold computing, inteRNA, for RNA-RNA interaction prediction, piRNA, for predicting the joint partition function, equilibrium...

some form of small RNAs. One such class of sRNAs is the Piwi-interacting RNAs (piRNAs). Much like in RdDM, piRNAs primarily function to target and silence...

rearrangement of higher order chromatin structure, non-coding RNAs, and interfering RNAs. A single evolutionary purpose of imprinting is still unknown...

duplication of genomic RNAs from the generation of functional RNAs allowed for much greater duplication fidelity of genomic RNAs without compromising the...

chemical modification of other RNAs, mainly transfer RNAs (tRNA), small nuclear RNAs (snRNA), and especially ribosomal RNAs (rRNA) as a part of ribosome synthesis...

HO, Slavin G (July 1992). "Epstein Barr virus (EBV) encoded small RNAs: Targets for detection by in situ hybridisation with oligonucleotide probes". Journal...

and an anticodon binding domain (which interacts mostly with the anticodon region of the tRNA). Transfer-RNAs for different amino acids differ not only...

Gondry, Muriel; Schmitt, Emmanuelle (July 2018). "Structural basis for partition of the cyclodipeptide synthases into two subfamilies". Journal of Structural...

strand species interacting to form multiple species of ordered complexes, NUPACK calculates for each ordered complex: the partition function, the minimum...

statistical partition function. Unlike other structure prediction tools, NUPACK is capable of handling an arbitrary number of interacting strands rather...

synthetases. These latter enzymes link amino acids to their cognate transfer RNAs (tRNA) in aminoacylation reactions that establish the connection between a specific...

Synaptotagmin-binding, cytoplasmic RNA-interacting protein (SYNCRIP), also known as heterogeneous nuclear ribonucleoprotein (hnRNP) Q or NS1-associated...

upstream of repA. repE encodes for a small antisense RNA and is located between repB and repC. Additionally, there is a partitioning site (parS) and an origin...

environments such as hot springs are prized by industrial users for their ability to function at high temperatures, allowing enzyme-catalysed reactions to...

et al. (September 2020). "Enhancer RNAs predict enhancer-gene regulatory links and are critical for enhancer function in neuronal systems". Nucleic Acids...

(2023-03-13). "Base Pair: Definition, Rules In DNA And RNA". Retrieved 2023-08-04. "DNA function & structure (with diagram) (article)". Khan Academy. Retrieved...

transcription of genetic information from DNA to messenger RNA, by binding to a specific DNA sequence. The function of TFs is to regulate—turn on and off—genes in...

protein needed for initiation of transcription in bacteria. It is a bacterial transcription initiation factor that enables specific binding of RNA polymerase...

nucleotides for each tRNA that slips. The slippery sequence for a +1 frameshift signal does not have the same motif, and instead appears to function by pausing...

code for proteins but interact with the host cell and use the host machinery for their replication. The hepatitis delta virus of humans has an RNA genome...

known enzymatic activity and functions as a scaffolding protein. It contains 10 NR-interacting boxes (LXXLL motifs) and functions as a coregulator of several...

PMID 15294028. McCaskill JS (1990). "The equilibrium partition function and base pair binding probabilities for RNA secondary structure". Biopolymers. 29 (6–7):...

Non-coding RNA (ncRNA) gene silencing involves various types of non-coding RNAs, such as microRNAs (miRNAs), long non-coding RNAs (lncRNAs), and small...

20 free amino acids by translation of a messenger RNA via a mechanism of ribosomes, transfer RNAs, and a group of related proteins. Although LUCA was...

proteins that are required for fully functioning CTCF insulators. These proteins include, but are not limited to cohesin, RNA polymerase, and CP190. The...

nucleoid-associated RNA molecules that interact with HU. Several of them are non-coding RNAs, and one such RNA named naRNA4 (nucleoid-associated RNA 4), is encoded...

effects of arginine methylation on biochemical functions such as transcription activation and repression, mRNA splicing, nuclear-cytosolic shuttling, and...

The system identifies the genes encoding all proteins, transfer RNAs, ribosomal RNAs, in order to make initial functional assignments. The GeneMark program...