A protein contact map represents the distance between all possible amino acid residue pairs of a three-dimensional protein structure using a binary two-dimensional...

has been used in the inference of protein residue contacts, RNA structure prediction, the inference of protein-protein interaction networks, the modeling...

I-TASSER Nucleic acid tertiary structure Protein contact map Proteopedia Structural biology Structural motif Protein tandem repeats IUPAC, Compendium of Chemical...

and may or may not have a square in the middle of the dot plot. Protein contact map Recurrence plot Self-similarity matrix Gibbs, Adrian J.; McIntyre...

associated measurements amino acid rotamer libraries, protein Ramachandran plot, protein contact map structure building and bond rotation molecular dynamics...

applied to proteomics problems such as protein side-chain prediction, protein loop modeling, and protein contact map prediction. Metagenomics is the study...

example, protein contact maps, positions of alpha carbon atoms only or backbone chain atoms only. There are many computational tools for protein structure...

in CASP7. In CASP11, a way to predict the protein contact map by co-evolution of residues in related proteins called GREMLIN was added, allowing for more...

Activated Protein (MAP) kinase kinase kinase (MAPKKK, MKKK, M3K, or, MAP3K) is a serine/threonine-specific protein kinase which acts upon MAP kinase kinase...

Protein–protein interactions (PPIs) are physical contacts of high specificity established between two or more protein molecules as a result of biochemical...

et al,Deep-learning contact-map guided protein structure prediction in CASP13 Archived 2022-01-22 at the Wayback Machine, Proteins: Structure, Function...

known structures and contact maps, including the prediction of experimentally unsolved transmembrane proteins. Comparative protein modeling uses previously...

monopartite and around 8.9 kbp in length. The genome codes for nine proteins. Proteins of orthobornaviruses that have been characterized: In the Mononegavirales...

an integral ER membrane protein, is involved in ER-PM contact stabilization by interacting with PIPs in the PM. In these contact sites, voltage-gated Ca2+...

of axonal microtubules. Other nervous system microtubule-associated proteins (MAPs) may perform similar functions, as suggested by tau knockout mice that...

improve the contact determination. The Protein Data Bank (PDB) is a database of 3D structure data for large biological molecules, such as proteins, DNA, and...

polymerase atp-dependent protease ribosomal proteins tRNAs nicotiana tabacum edit · image An interactive gene map of chloroplast DNA from Nicotiana tabacum...

In molecular biology, a protein domain is a region of a protein's polypeptide chain that is self-stabilizing and that folds independently from the rest...

of protein structure prediction software summarizes notable used software tools in protein structure prediction, including homology modeling, protein threading...

The Human Protein Atlas (HPA) is a Swedish-based program started in 2003 with the aim to map all the human proteins in cells, tissues and organs using...

MR543795 Vendruscolo, M.; Najmanovich, R.; Domany, E. (1999), "Protein Folding in Contact Map Space", Physical Review Letters, 82 (3): 656–659, arXiv:cond-mat/9901215...

organisms that requires close contact. There are three types: A membrane ligand (protein, oligosaccharide, lipid) and a membrane protein of two adjacent cells...

The Protein Data Bank (PDB) is a database for the three-dimensional structural data of large biological molecules such as proteins and nucleic acids, which...

believed to be a prion, thus being composed solely of protein material. Misfolded prion proteins carry the disease between individuals and cause deterioration...

molecular biology, proteins are generally thought to adopt unique structures determined by their amino acid sequences. However, proteins are not strictly...

high-molecular-weight cytoskeletal protein concentrated at regions of cell–substratum contact and, in lymphocytes, at cell–cell contacts. Discovered in 1983 by Keith...

In cell biology, protein kinase A (PKA) is a family of serine-threonine kinases whose activity is dependent on cellular levels of cyclic AMP (cAMP). PKA...

polymorphic genes that code for cell surface proteins essential for the adaptive immune system. These cell surface proteins are called MHC molecules. Its name comes...

Cholesteryl ester transfer protein (CETP), also called plasma lipid transfer protein, is a plasma protein that facilitates the transport of cholesteryl...

A serine/threonine protein kinase (EC 2.7.11.-) is a kinase enzyme, in particular a protein kinase, that phosphorylates the OH group of the amino-acid...