• Thumbnail for Ubiquitin
    Proteins can specifically bind to ubiquitin via ubiquitin-binding domains (UBDs). The distances between individual ubiquitin units in chains differ between...
    101 KB (11,338 words) - 19:50, 22 April 2025
  • Thumbnail for Ubiquitin-binding domain
    Ubiquitin-binding domains (UBDs) are protein domains that recognise and bind non-covalently to ubiquitin through protein-protein interactions. As of 2019...
    6 KB (658 words) - 17:44, 22 June 2022
  • Thumbnail for UBA protein domain
    for protein degradation. UBA domains are among the most common ubiquitin-binding domains. Proteins containing UBA domains are involved in a variety of...
    8 KB (787 words) - 13:58, 10 September 2024
  • Thumbnail for Ubiquitin carboxy-terminal hydrolase L1
    the causative mutation was in the UCHL1 gene (specifically, the ubiquitin binding domain, E7A) display blindness, cerebellar ataxia, nystagmus, dorsal column...
    21 KB (2,637 words) - 03:01, 26 November 2023
  • Thumbnail for Proteasome
    as a ubiquitin receptor using a Yeast-2-hybrid screen. Ubiquitin binding to Rpn13 is through the pleckstrin-like receptor for the Ub (PRU) domain. and...
    140 KB (16,845 words) - 21:59, 29 May 2025
  • Thumbnail for Ubiquitin ligase
    and a substrate binding domain, which gives the E3 its substrate specificity. Ubiquitin signaling relies on the diversity of ubiquitin tags for the specificity...
    40 KB (4,436 words) - 21:52, 23 May 2025
  • Thumbnail for UBAP1
    connections to ubiquitin and the ubiquitination pathway. The ubiquitin associated domain is thought to be a non-covalent ubiquitin-binding domain consisting...
    6 KB (692 words) - 02:33, 27 December 2023
  • results: Ubiquitin Binding Behavior: Binding to the different ubiquitin-binding domains (UBDs) within ESCRT-0 is non-cooperative, meaning each domain interats...
    38 KB (4,880 words) - 00:25, 24 May 2025
  • Thumbnail for RING finger domain
    proteins with RING finger domains are the largest type of ubiquitin ligases in the human genome. Zinc finger (Znf) domains are relatively small protein...
    13 KB (1,382 words) - 22:42, 15 April 2025
  • Thumbnail for DNA polymerase
    Rev1 has three regions of interest in the BRCT domain, ubiquitin-binding domain, and C-terminal domain and has dCMP transferase ability, which adds deoxycytidine...
    59 KB (7,100 words) - 18:11, 10 February 2025
  • Thumbnail for Deubiquitinating enzyme
    ubiquitin proteases, ubiquitin hydrolases, or ubiquitin isopeptidases, are a large group of proteases that cleave ubiquitin from proteins. Ubiquitin is...
    37 KB (4,317 words) - 07:27, 24 January 2025
  • Thumbnail for TAR DNA-binding protein 43
    domain was found to have a ubiquitin-like structure. It bears 27,6% of homology with Ubiquitin-1 and a β1-β2-α1-β3-β4-β5-β6 + 2*SO42- form. Ubiquitin-like...
    40 KB (4,560 words) - 00:13, 27 May 2025
  • Thumbnail for CBL (gene)
    Cbl's adaptor functions C-terminal ubiquitin-associated domain (UBA domain): the site of ubiquitin binding This domain structure and the tyrosine and serine-rich...
    34 KB (3,877 words) - 07:03, 18 May 2025
  • Thumbnail for Alpha Arrestin
    their L/PPXY motifs, bind the WW domain of the Rsp5 ubiquitin ligase. By binding to both the membrane protein and ubiquitin ligase, α-arrestins serve as a...
    47 KB (5,065 words) - 23:43, 22 May 2025
  • Thumbnail for SUMO protein
    are over 53,000 SUMO binding sites, making it a substantial component of fundamental biology. SUMO proteins are similar to ubiquitin and are considered...
    40 KB (4,909 words) - 18:03, 25 May 2025
  • Thumbnail for SCF complex
    E3 ubiquitin ligases that target different substrates. RBX1 – Rbx1 contains a small, zinc-binding Really Interesting New Gene (RING) finger domain, to...
    16 KB (2,021 words) - 15:42, 12 April 2025
  • structurally conserved binding region. The E3 molecule is responsible for binding the target protein substrate and transferring the ubiquitin from the E2 cysteine...
    5 KB (605 words) - 04:25, 28 November 2023
  • Thumbnail for Ubiquitin C
    encoded by the UBC gene in humans. Polyubiquitin-C is one of the sources of ubiquitin, along with UBB, UBA52, and RPS27A. UBC gene is one of the two stress-regulated...
    37 KB (4,261 words) - 18:28, 15 September 2024
  • Thumbnail for Hsp90
    Hsp90 (section ATP binding)
    The Hsp90 protein contains three functional domains, the ATP-binding, protein-binding, and dimerizing domain, each of which playing a crucial role in the...
    51 KB (5,551 words) - 22:14, 23 April 2025
  • Thumbnail for Isopeptide bond
    C, Dikic I (April 2009). "Functional roles of ubiquitin-like domain (ULD) and ubiquitin-binding domain (UBD) containing proteins". Chemical Reviews. 109...
    23 KB (3,005 words) - 16:43, 22 March 2025
  • chromatin-associated ubiquitin ligase, binding to histones is direct and shows a remarkable preference for histone H3 and its N-terminal tail. The SRA-YDG domain contained...
    3 KB (395 words) - 21:06, 27 June 2022
  • Thumbnail for WWE protein domain
    protein-protein interactions in ubiquitin and ADP ribose conjugation systems (Poly ADP ribose polymerase). This domain is found as a tandem repeat at the...
    3 KB (276 words) - 20:56, 27 June 2022
  • Thumbnail for Ubiquitin-interacting motif
    of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains. In most of these proteins...
    6 KB (604 words) - 06:36, 26 April 2024
  • Thumbnail for Two-hybrid screening
    called the DNA-binding domain (DBD or often also abbreviated as BD) and activating domain (AD). The BD is the domain responsible for binding to the UAS and...
    47 KB (6,112 words) - 20:23, 24 May 2025
  • Thumbnail for CUL3
    regulated by the attachment of the ubiquitin-like protein NEDD8 to a conserved Lys residue in the cullin-homology domain, the process called neddylation...
    20 KB (2,380 words) - 07:40, 8 October 2024
  • Thumbnail for Parkin (protein)
    Parkin is a 465-amino acid residue E3 ubiquitin ligase, a protein that in humans and mice is encoded by the PARK2 gene. Parkin plays a critical role in...
    47 KB (5,731 words) - 05:58, 21 May 2025
  • Thumbnail for Ubiquitin A-52 residue ribosomal protein fusion product 1
    phosphotyrosine-independent ligand of the SH2 domain of p56lck, belongs to a new class of ubiquitin-binding proteins". J. Biol. Chem. 271 (34): 20235–7...
    6 KB (825 words) - 04:26, 28 November 2023
  • Thumbnail for Endoplasmic-reticulum-associated protein degradation
    glycoproteins for degradation by facilitating binding of ERAD lectins OS9 and XTP3-B. Because the ubiquitin–proteasome system (UPS) is located in the cytosol...
    13 KB (1,709 words) - 20:13, 25 May 2025
  • Thumbnail for FADD
    AR, Frisch SM (Apr 2003). "Fas-associated death domain protein interacts with methyl-CpG binding domain protein 4: a potential link between genome surveillance...
    34 KB (4,191 words) - 12:22, 5 December 2024
  • Thumbnail for FERM domain
    module is ubiquitin-like. The C-terminal module is a PH-like domain. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30...
    7 KB (774 words) - 21:55, 30 August 2024