Proteins can specifically bind to ubiquitin via ubiquitin-binding domains (UBDs). The distances between individual ubiquitin units in chains differ between...
101 KB (11,338 words) - 19:50, 22 April 2025
Ubiquitin-binding domains (UBDs) are protein domains that recognise and bind non-covalently to ubiquitin through protein-protein interactions. As of 2019...
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for protein degradation. UBA domains are among the most common ubiquitin-binding domains. Proteins containing UBA domains are involved in a variety of...
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the causative mutation was in the UCHL1 gene (specifically, the ubiquitin binding domain, E7A) display blindness, cerebellar ataxia, nystagmus, dorsal column...
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Proteasome (redirect from Ubiquitin proteosome system)
as a ubiquitin receptor using a Yeast-2-hybrid screen. Ubiquitin binding to Rpn13 is through the pleckstrin-like receptor for the Ub (PRU) domain. and...
140 KB (16,845 words) - 21:59, 29 May 2025
and a substrate binding domain, which gives the E3 its substrate specificity. Ubiquitin signaling relies on the diversity of ubiquitin tags for the specificity...
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connections to ubiquitin and the ubiquitination pathway. The ubiquitin associated domain is thought to be a non-covalent ubiquitin-binding domain consisting...
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results: Ubiquitin Binding Behavior: Binding to the different ubiquitin-binding domains (UBDs) within ESCRT-0 is non-cooperative, meaning each domain interats...
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proteins with RING finger domains are the largest type of ubiquitin ligases in the human genome. Zinc finger (Znf) domains are relatively small protein...
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Rev1 has three regions of interest in the BRCT domain, ubiquitin-binding domain, and C-terminal domain and has dCMP transferase ability, which adds deoxycytidine...
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Deubiquitinating enzyme (redirect from Ubiquitin-specific protease)
ubiquitin proteases, ubiquitin hydrolases, or ubiquitin isopeptidases, are a large group of proteases that cleave ubiquitin from proteins. Ubiquitin is...
37 KB (4,317 words) - 07:27, 24 January 2025
domain was found to have a ubiquitin-like structure. It bears 27,6% of homology with Ubiquitin-1 and a β1-β2-α1-β3-β4-β5-β6 + 2*SO42- form. Ubiquitin-like...
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CBL (gene) (redirect from Cbl ubiquitin ligase)
Cbl's adaptor functions C-terminal ubiquitin-associated domain (UBA domain): the site of ubiquitin binding This domain structure and the tyrosine and serine-rich...
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their L/PPXY motifs, bind the WW domain of the Rsp5 ubiquitin ligase. By binding to both the membrane protein and ubiquitin ligase, α-arrestins serve as a...
47 KB (5,065 words) - 23:43, 22 May 2025
SUMO protein (redirect from Small ubiquitin-like modifier)
are over 53,000 SUMO binding sites, making it a substantial component of fundamental biology. SUMO proteins are similar to ubiquitin and are considered...
40 KB (4,909 words) - 18:03, 25 May 2025
SCF complex (redirect from SCF ubiquitin ligase complex)
E3 ubiquitin ligases that target different substrates. RBX1 – Rbx1 contains a small, zinc-binding Really Interesting New Gene (RING) finger domain, to...
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structurally conserved binding region. The E3 molecule is responsible for binding the target protein substrate and transferring the ubiquitin from the E2 cysteine...
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encoded by the UBC gene in humans. Polyubiquitin-C is one of the sources of ubiquitin, along with UBB, UBA52, and RPS27A. UBC gene is one of the two stress-regulated...
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Hsp90 (section ATP binding)
The Hsp90 protein contains three functional domains, the ATP-binding, protein-binding, and dimerizing domain, each of which playing a crucial role in the...
51 KB (5,551 words) - 22:14, 23 April 2025
C, Dikic I (April 2009). "Functional roles of ubiquitin-like domain (ULD) and ubiquitin-binding domain (UBD) containing proteins". Chemical Reviews. 109...
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chromatin-associated ubiquitin ligase, binding to histones is direct and shows a remarkable preference for histone H3 and its N-terminal tail. The SRA-YDG domain contained...
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protein-protein interactions in ubiquitin and ADP ribose conjugation systems (Poly ADP ribose polymerase). This domain is found as a tandem repeat at the...
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of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains. In most of these proteins...
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called the DNA-binding domain (DBD or often also abbreviated as BD) and activating domain (AD). The BD is the domain responsible for binding to the UAS and...
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CUL3 (section Cullin 3-RING E3 ubiquitin ligases)
regulated by the attachment of the ubiquitin-like protein NEDD8 to a conserved Lys residue in the cullin-homology domain, the process called neddylation...
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Parkin is a 465-amino acid residue E3 ubiquitin ligase, a protein that in humans and mice is encoded by the PARK2 gene. Parkin plays a critical role in...
47 KB (5,731 words) - 05:58, 21 May 2025
phosphotyrosine-independent ligand of the SH2 domain of p56lck, belongs to a new class of ubiquitin-binding proteins". J. Biol. Chem. 271 (34): 20235–7...
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Endoplasmic-reticulum-associated protein degradation (section Ubiquitin-dependent degradation by the proteasome)
glycoproteins for degradation by facilitating binding of ERAD lectins OS9 and XTP3-B. Because the ubiquitin–proteasome system (UPS) is located in the cytosol...
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FADD (redirect from Fatty acid-binding protein 7)
AR, Frisch SM (Apr 2003). "Fas-associated death domain protein interacts with methyl-CpG binding domain protein 4: a potential link between genome surveillance...
34 KB (4,191 words) - 12:22, 5 December 2024
module is ubiquitin-like. The C-terminal module is a PH-like domain. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30...
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