Homology modeling, also known as comparative modeling of protein, refers to constructing an atomic-resolution model of the "target" protein from its amino...

notable used software tools in protein structure prediction, including homology modeling, protein threading, ab initio methods, secondary structure prediction...

have homologous proteins with known structure. It differs from the homology modeling method of structure prediction as it (protein threading) is used for...

a signalling molecule when that agonist is in high concentration Homology modeling, a method of protein structure prediction Homologous series, a series...

Swiss-model (stylized as SWISS-MODEL) is a structural bioinformatics web-server dedicated to homology modeling of 3D protein structures. As of 2024[update]...

Modeller, often stylized as MODELLER, is a computer program used for homology modeling to produce models of protein tertiary structures and quaternary...

study of available software for high-accuracy homology modeling: from sequence alignments to structural models". Protein Science. 15 (4): 808–24. doi:10.1110/ps...

Protein design to improve stability or modify affinity or specificity Homology modeling The energy function includes terms that have been found to be important...

In biology, homology is similarity in anatomical structures or genes between organisms of different taxa due to shared ancestry, regardless of current...

initio, fragment based methods, homology modeling, and protein threading.[page needed] These methods involve free modeling without using any structural information...

uses homology modeling and sequence/structure threading to rapidly generate a first-pass model of the query protein. The use of homology modeling/threading...

Carlo molecular modeling List of software for nanostructures modeling Molecular design software Molecular dynamics Molecular modeling on GPUs Molecule...

RAPTOR to create a highly reliable model of the protein. Protein threading is more effective than homology modeling, especially for proteins which have...

Varasteh, A. (April 2011). "Chenopodium album pollen profilin (Che a 2): homology modeling and evaluation of cross-reactivity with allergenic profilins based...

popular homology modeling program MODELLER and used to assess the energy of the protein model generated through many iterations by MODELLER, which produces...

Consequently, they often cannot be modeled using standard homology modeling techniques. More constrained versions of loop modeling are also used in the data fitting...

Sylte, I. (2011). Homology Modeling of Transporter Proteins (Carriers and Ion Channels). In: Orry, A., Abagyan, R. (eds) Homology Modeling. Methods in Molecular...

scenario is close to experimental techniques (NMR) by the use of homology modeling based on molecular evolution. CASP, which was launched in 1994 to...

Jürgen; Guex, Nicolas; Peitsch, Manuel C. (2003). "SWISS-MODEL: An automated protein homology-modeling server". Nucleic Acids Res. 31 (13): 3381–5. doi:10...

biology, including for membrane proteins. Homology modeling can be used to construct an atomic-resolution model of the "target" integral protein from its...

and classified by Chothia et al. and more recently by North et al. Homology modeling is a computational method to build tertiary structures from amino-acid...

homology is used to determine which parts of a protein are important in structure formation and interaction with other proteins. Homology modeling is...

homology modeling of proteins. Meanwhile, alternative empirical scoring functions have been developed for ligand docking, protein folding, homology model...

family) allows highly accurate prediction of the tertiary structure by homology modeling. If the full-length protein sequence is available, it is possible...

Pharmacy Research. 9: 278–287. Dilip Gore Ashish Chakule (2012). "Homology modeling and function prediction in uncharacterized proteins of Pseudoxanthomonas...

method) will always be more reliable than modeled estimates of outcomes. Within modeling and simulation, a model is a task-driven, purposeful simplification...

use just the sequence of the protein. Threading and homology modeling methods can build a 3-D model for a protein of unknown structure from experimental...

Borel–Moore homology Cellular homology Cyclic homology Hochschild homology Floer homology Intersection homology K-homology Khovanov homology Morse homology Persistent...

important functional consequences. He also pioneered the field of ligand homology modeling with his threading based, FINDSITE approach for protein function inference...

prediction, known as homology modeling, relies on the existence of a "template" structure with sequence similarity to the protein being modeled; structural genomics'...