Protein secondary structure is the local spatial conformation of the polypeptide backbone excluding the side chains. The two most common secondary structural...
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its secondary and tertiary structure from primary structure. Structure prediction is different from the inverse problem of protein design. Protein structure...
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single polypeptide chain "backbone" with one or more protein secondary structures, the protein domains. Amino acid side chains and the backbone may interact...
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Protein structure is the three-dimensional arrangement of atoms in an amino acid-chain molecule. Proteins are polymers – specifically polypeptides – formed...
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for structure prediction. Detailed list of programs can be found at List of protein secondary structure prediction programs List of protein secondary structure...
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domains of protein structure and nucleic acid structure, including such secondary-structure features as alpha helixes and beta sheets for proteins, and hairpin...
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Secondary structure prediction is a set of techniques in bioinformatics that aim to predict the secondary structures of proteins and nucleic acid sequences...
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core of the protein. Secondary structure hierarchically gives way to tertiary structure formation. Once the protein's tertiary structure is formed and...
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Quinary structure is thus the fifth level of protein complexity, additional to protein primary, secondary, tertiary and quaternary structures. As opposed...
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A protein contact map represents the distance between all possible amino acid residue pairs of a three-dimensional protein structure using a binary two-dimensional...
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structure of the protein. The tertiary structure is the proteins overall 3D structure which is made of different secondary structures folding together...
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PSIPRED (section Secondary structure)
PSI-blast based secondary structure PREDiction (PSIPRED) is a method used to investigate protein structure. It uses artificial neural network machine learning...
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responding to stimuli, providing structure to cells and organisms, and transporting molecules from one location to another. Proteins differ from one another primarily...
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Beta sheet (redirect from Greek key (protein structure))
(β-sheet, also β-pleated sheet) is a common motif of the regular protein secondary structure. Beta sheets consist of beta strands (β-strands) connected laterally...
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supersecondary structure is a compact three-dimensional protein structure of several adjacent elements of a secondary structure that is smaller than a protein domain...
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represent the protein structure allows the solution of many problems including secondary structure prediction, protein-protein interactions, protein-drug interaction...
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active forms, GLP-1 (7–36) amide and GLP-1 (7–37). Active GLP-1 protein secondary structure includes two α-helices from amino acid position 13–20 and 24–35...
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biology, an intrinsically disordered protein (IDP) is a protein that lacks a fixed or ordered three-dimensional structure, typically in the absence of its...
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Polyproline helix (category Protein structural motifs)
A polyproline helix is a type of protein secondary structure which occurs in proteins comprising repeating proline residues. A left-handed polyproline...
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Circular dichroism (category Protein structure)
fields. Most notably, far-UV CD is used to investigate the secondary structure of proteins. UV/Vis CD is used to investigate charge-transfer transitions...
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Protein primary structure is the linear sequence of amino acids in a peptide or protein. By convention, the primary structure of a protein is reported...
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Structural motif (redirect from Secondary structure motif)
chain-like biological molecule, such as a protein or nucleic acid, a structural motif is a common three-dimensional structure that appears in a variety of different...
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three-dimensional structure. Many proteins consist of several domains, and a domain may appear in a variety of different proteins. Molecular evolution...
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(Homology-derived Secondary Structure of Proteins) is a database that combines structural and sequence information about proteins. This database has...
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Protein quaternary structure is the fourth (and highest) classification level of protein structure. Protein quaternary structure refers to the structure...
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that share similar amino acid and secondary structure proportions. Each class contains multiple, independent protein superfamilies (i.e. are not necessarily...
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bioinformatics algorithms had to be programmed by hand; for problems such as protein structure prediction, this proved difficult. Machine learning techniques such...
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as proteins of known structures, but do not have homologous proteins with known structure. It differs from the homology modeling method of structure prediction...
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List of notable protein secondary structure prediction programs List of protein structure prediction software Protein structure prediction...
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Nucleic acid secondary structure is the basepairing interactions within a single nucleic acid polymer or between two polymers. It can be represented as...
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