• Thumbnail for Needleman–Wunsch algorithm
    The NeedlemanWunsch algorithm is an algorithm used in bioinformatics to align protein or nucleotide sequences. It was one of the first applications of...
    25 KB (3,217 words) - 12:10, 12 July 2025
  • Thumbnail for Smith–Waterman algorithm
    Waterman in 1981. Like the NeedlemanWunsch algorithm, of which it is a variation, Smith–Waterman is a dynamic programming algorithm. As such, it has the desirable...
    36 KB (4,666 words) - 17:52, 18 July 2025
  • into the other. Hirschberg's algorithm is simply described as a more space-efficient version of the NeedlemanWunsch algorithm that uses dynamic programming...
    9 KB (1,326 words) - 15:06, 19 April 2025
  • Thumbnail for Dynamic time warping
    Dynamic time warping (category Machine learning algorithms)
    very similar to the NeedlemanWunsch algorithm. This example illustrates the implementation of the dynamic time warping algorithm when the two sequences...
    32 KB (3,863 words) - 02:31, 2 August 2025
  • least seven independent discoveries, including those by Viterbi, Needleman and Wunsch, and Wagner and Fischer. It was introduced to natural language processing...
    20 KB (2,684 words) - 15:52, 27 July 2025
  • Wikibooks has a book on the topic of: Algorithm Implementation/Strings/Longest common substring In computer science, a longest common substring of two...
    8 KB (1,072 words) - 16:32, 25 May 2025
  • photographer and designer Wunsch Building, in Brooklyn, New York NeedlemanWunsch algorithm, algorithm used in bioinformatics to align protein or nucleotide sequences...
    1 KB (197 words) - 22:13, 9 June 2024
  • Hirschberg's algorithm: finds the least cost sequence alignment between two sequences, as measured by their Levenshtein distance NeedlemanWunsch algorithm: find...
    72 KB (7,951 words) - 17:13, 5 June 2025
  • computer science, Thompson's construction algorithm, also called the McNaughton–Yamada–Thompson algorithm, is a method of transforming a regular expression...
    14 KB (1,221 words) - 06:31, 14 April 2025
  • Thumbnail for Sequence alignment
    Sequence alignment (category Bioinformatics algorithms)
    and/or end in gaps.) A general global alignment technique is the NeedlemanWunsch algorithm, which is based on dynamic programming. Local alignments are more...
    57 KB (6,913 words) - 04:44, 15 July 2025
  • Thumbnail for Dynamic programming
    optimum. Different variants exist, see Smith–Waterman algorithm and NeedlemanWunsch algorithm. The Tower of Hanoi or Towers of Hanoi is a mathematical...
    59 KB (9,146 words) - 13:00, 28 July 2025
  • BLAST (biotechnology) (category Bioinformatics algorithms)
    Smith-Waterman algorithm does. The Smith-Waterman algorithm was an extension of a previous optimal method, the NeedlemanWunsch algorithm, which was the...
    38 KB (4,919 words) - 15:50, 17 July 2025
  • Thumbnail for Longest common subsequence
    linear in the lengths of the remaining sequences, so the time for this algorithm would be O ( 2 n 1 ∑ i > 1 n i ) . {\displaystyle O\left(2^{n_{1}}\sum...
    35 KB (4,355 words) - 22:13, 6 April 2025
  • quasi-Newton class 1970 – NeedlemanWunsch algorithm published by Saul B. Needleman and Christian D. Wunsch 1972 – Edmonds–Karp algorithm published by Jack Edmonds...
    20 KB (2,080 words) - 00:53, 13 May 2025
  • Thumbnail for Hopper (microarchitecture)
    clamp to zero. Similarly, Hopper speeds up implementations of the NeedlemanWunsch algorithm. The Hopper architecture was the first Nvidia architecture to...
    19 KB (1,803 words) - 23:26, 25 May 2025
  • Thumbnail for Approximate string matching
    Approximate string matching (category String matching algorithms)
    hashing Metaphone NeedlemanWunsch algorithm Plagiarism detection Regular expressions for fuzzy and non-fuzzy matching Smith–Waterman algorithm Soundex String...
    16 KB (1,910 words) - 05:45, 19 July 2025
  • Thumbnail for Rope (data structure)
    complexity of source code; greater risk of bugs This table compares the algorithmic traits of string and rope implementations, not their raw speed. Array-based...
    16 KB (1,787 words) - 10:55, 12 May 2025
  • use of closely related algorithms such as NeedlemanWunsch algorithm or Smith–Waterman algorithm.[citation needed] The algorithm can be used with any set...
    16 KB (2,192 words) - 13:03, 9 June 2025
  • PrefixSpan algorithm and place the products on shelves based on the order of mined purchasing patterns. Commonly used algorithms include: GSP algorithm Sequential...
    9 KB (1,104 words) - 19:42, 10 June 2025
  • an algorithm for compiling a regular expression to an NFA that can efficiently perform pattern matching on strings. Conversely, Kleene's algorithm can...
    29 KB (4,498 words) - 11:45, 27 July 2025
  • Substring index (category Algorithms on strings)
    related to the suffix tree and constructable by variants of the same algorithms. The suffix array, a sorted array of the starting positions of suffixes...
    5 KB (611 words) - 08:19, 10 January 2025
  • name, it matches any value, but does not bind the value to any name. Algorithms for matching wildcards in simple string-matching situations have been...
    28 KB (3,292 words) - 08:36, 25 June 2025
  • automaton Sequence alignment BLAST Hirschberg's algorithm NeedlemanWunsch algorithm Smith–Waterman algorithm Data structure DAFSA Substring index Suffix...
    8 KB (988 words) - 21:36, 23 September 2024
  • lengths. The Needleman-Wunsch algorithm is a dynamic programming technique used to conduct global alignment. Essentially, the algorithm divides the problem...
    19 KB (2,483 words) - 15:21, 12 July 2025
  • similar. This led to the development of the Needleman-Wunsch algorithm, which is a dynamic programming algorithm for comparing sets of amino acid sequences...
    14 KB (2,004 words) - 18:40, 23 June 2025
  • Thumbnail for Suffix automaton
    the University of Colorado Boulder. They suggested a linear time online algorithm for its construction and showed that the suffix automaton of a string...
    55 KB (8,334 words) - 06:31, 14 April 2025
  • Shneiderman Necker cube – Louis Albert Necker NeedlemanWunsch algorithm – Saul B. Needleman and Christian D. Wunsch Néel temperature – Louis Néel Nernst effect...
    72 KB (6,888 words) - 11:20, 28 June 2025
  • sequences (see sequence alignment). Optimal matching uses the Needleman-Wunsch algorithm. Let S = ( s 1 , s 2 , s 3 , … s T ) {\displaystyle S=(s_{1},s_{2}...
    5 KB (967 words) - 18:23, 19 May 2024
  • Ternary search tree (category Search algorithms)
    (by Jon Bentley and Robert Sedgewick) about ternary search trees and algorithms for "sorting and searching strings" Ternary Search Tries – a video by...
    14 KB (1,784 words) - 21:43, 13 November 2024
  • and acknowledges that the list is incomplete:: 43  Vintsyuk, 1968 Needleman and Wunsch, 1970 Sankoff, 1972 Sellers, 1974 Wagner and Fischer, 1974 Lowrance...
    10 KB (1,190 words) - 11:24, 22 July 2025