Structural alignment attempts to establish homology between two or more polymer structures based on their shape and three-dimensional conformation. This...

functional or structural role. Very short or very similar sequences can be aligned by hand. However, most interesting problems require the alignment of lengthy...

structural alignment. Key map: Class: Cα -- Backbone Atom (Cα) Alignment; AllA -- All Atoms Alignment; SSE -- Secondary Structure Elements Alignment;...

alignment and multiple sequence alignment. See structural alignment software for structural alignment of proteins. *Sequence type: protein or nucleotide...

inferred (see homology). Usually this common ancestry is inferred from structural alignment and mechanistic similarity, even if no sequence similarity is evident...

external landmarks Stone alignment, a linear arrangement of upright, parallel megalithic standing stones Structural alignment, establishing similarities...

is necessary because algorithms for both multiple sequence alignment and structural alignment use heuristics which do not always perform perfectly. The...

still is a challenge due to the high computational cost of structural alignments. Structural signatures based on graph distance patterns among atom pairs...

voltage, or electrical pressure. Given the similarity in structure, or structural alignment, between these domains, structure mapping theory would predict that...

Livingstone, alignment is "often criticized as being arbitrary and unreal, but... it works if played well and provides a useful structural framework on...

Multiple sequence alignment (MSA) is the process or the result of sequence alignment of three or more biological sequences, generally protein, DNA, or...

structure alignment program (SSAP) in chemistry, physics, and biology is a method that uses double dynamic programming to produce a structural alignment based...

2016). "Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignment". Bioinformatics. 32 (8): 1238–1240. doi:10.1093/bioinformatics/btv748...

sequence conservation alone. The sequence alignment and template structure are then used to produce a structural model of the target. Because protein structures...

single-stranded regions starts with exploring features of structural multiple sequence alignment of related RNAs. S → a S a | b S b | a a | b b {\displaystyle...

structure prediction software Category:Molecular dynamics software Structural alignment software Other Compression of genomic sequencing data Bioinformatics...

In the field of artificial intelligence (AI), alignment aims to steer AI systems toward a person's or group's intended goals, preferences, or ethical...

a structural alignment is usually performed first, and TM-score is then calculated on the commonly aligned residues from the structural alignment. An...

defined in IEEE 802.2 Sequential structure alignment program, double dynamic programming method in Structural alignment Statements of Standard Accounting Practice...

certain degree. The combination of rigid and flexible chains induce structural alignment and fluidity between liquid crystal moieties. In doing so, varying...

Iyengar Yoga is a form of yoga as exercise with a focus on the structural alignment of the physical body through the practice of asanas. It differs from...

guide the sequence alignment, multiple structural alignment, homology modeling by (iteratively) combining sequence and structure alignment data, 'filtering'...

Notredame C (2006). "The iRMSD: a local measure of sequence alignment accuracy using structural information" (PDF). Bioinformatics. 22 (14): e35–39. doi:10...

The Structural Classification of Proteins (SCOP) database is a largely manual classification of protein structural domains based on similarities of their...

However, many proteins have retained very similar structures, and structural alignment can be used to demonstrate their homology. It has been suggested...

molecular docking, quantum chemistry Bioinformatics – sequence alignment, structural alignment, protein structure prediction Mathematics – graph/network theory...

voltage, or electrical pressure. Given the similarity in structure, or structural alignment, between these domains, structure mapping theory would predict that...

the "second brain" in the lower abdomen, improvement of health and structural alignment. The spiritual aspects of Wuxingheqidao, Daoyin practice are outlined...

Duckett, Catherine N.; Kjer, Karl M.; Gillespie, Joseph J. (2009). "Structural alignment of 18S and 28S rDNA sequences provides insights into phylogeny of...

in 2D and 3D, but later was applied to different problems such as structural alignment of proteins. Geometric hashing is a method used for object recognition...