COPASI (COmplex PAthway SImulator) is an open-source software application for creating and solving mathematical models of biological processes such as...
5 KB (390 words) - 05:41, 2 June 2025
equation}}+{\text{particular solution}}} Maxima, an open-source computer algebra system. COPASI, a free (Artistic License 2.0) software package for the integration and...
44 KB (5,187 words) - 16:53, 2 June 2025
concentrations changing as the reaction progresses (Time course run in COPASI). This is a typical kinetic profile for a multi-enzyme hydrolysis system...
99 KB (9,938 words) - 13:50, 22 May 2025
Kummer, Ursula; Mendes, Pedro; Pahle, Jürgen; Sahle, Sven (November 2017). "COPASI and its applications in biotechnology". Journal of Biotechnology. 261: 215–220...
45 KB (3,405 words) - 17:12, 20 June 2025
University of Lisbon (Lic) Aberystwyth University (PhD) Known for GEPASI COPASI Systems Biology Markup Language (SBML) MIRIAM Scientific career Fields Systems...
5 KB (305 words) - 06:11, 27 July 2024
for studying biochemical networks using experimental data . It developed COPASI (Complex Pathway Simulator), an open-source software package that allows...
12 KB (1,365 words) - 23:26, 5 March 2025
used by several worldwide projects such as BioModels Database, SABIO-RK, COPASI, A more thorough listing can be found on the website. Minimum information...
7 KB (806 words) - 17:02, 3 December 2023
S, Sahle S, Gauges R, Lee C, Pahle J, Simus N, et al. (December 2006). "COPASI--a COmplex PAthway SImulator". Bioinformatics. 22 (24): 3067–74. doi:10...
56 KB (6,761 words) - 08:37, 24 May 2024
Simcyp Simulator ADME Workbench General software: ADAPT 5 Berkeley Madonna COPASI: Biochemical System Simulator Ecolego Free simulation software: GNU MCSIM...
27 KB (3,156 words) - 00:35, 7 March 2025
virtual patient (Entelos). A few of these software tools are listed below: COPASI [4] runBiosimulations [5] Tellurium [6] Metabolism PhysioLab (Entelos)[7]...
6 KB (655 words) - 00:31, 25 May 2025
reaction. Software packages that include numerical integrators, such as COPASI or SBMLsimulator, are then able to simulate the system dynamics given an...
48 KB (5,355 words) - 11:48, 23 May 2025
fit experimental data can be estimated using algorithms developed by the COPASI software system. These tools are available in VCell. Models and simulation...
11 KB (1,190 words) - 22:08, 15 September 2024
coding. Other useful applications and learning environments are: Gepasi, Copasi, BioUML, Simbiology (MATLAB) and Bio-SPICE. The first conference in Synthetic...
31 KB (3,351 words) - 04:26, 22 June 2024
for small molecule identification from tandem mass spectrometry data), COPASI (open source software application for creating and solving mathematical...
25 KB (2,500 words) - 05:01, 10 September 2024
code. This feature was a result of a collaboration with the team behind COPASI. In April, 2015, Peccoud and colleagues published a library of biological...
13 KB (1,325 words) - 03:38, 2 June 2025
Kummer, U. (2009). "Computational Modeling of Biochemical Networks Using COPASI". Systems Biology. Methods in Molecular Biology. Vol. 500. pp. 17–59. doi:10...
17 KB (1,852 words) - 00:58, 3 September 2023
perceive images BASIL, vibratory system for deaf people to perceive sounds COPASI, software application for creating and solving mathematical models of biological...
7 KB (920 words) - 00:04, 15 October 2024
tools that can directly compute elasticities and control coefficients: COPASI (GUI) PySCeS (Python) SBW (GUI) libroadrunner (Python) VCell Classical Control...
29 KB (4,523 words) - 22:03, 20 June 2025