molecular biology and bioinformatics, the consensus sequence (or canonical sequence) is the calculated sequence of most frequent residues, either nucleotide...

The Kozak consensus sequence (Kozak consensus or Kozak sequence) is a nucleic acid motif that functions as the protein translation initiation site in...

sequences). A sequence logo is created from a collection of aligned sequences and depicts the consensus sequence and diversity of the sequences. Sequence logos...

database. Consensus sequence, the order of nucleotide or amino acid residues most frequently found within a DNA, RNA or protein sequence. Consensus theorem...

mitochondrial transcripts. The six-base consensus sequence is AGGAGG; in Escherichia coli, for example, the sequence is AGGAGGU, while the shorter GAGG dominates...

called the Pribnow box which has a shorter consensus sequence. The TATA box is considered a non-coding DNA sequence (also known as a cis-regulatory element)...

Such techniques belong to the discipline of bioinformatics. See also consensus sequence. Consider the N-glycosylation site motif mentioned above: Asn, followed...

element) has the consensus sequence TATAAT. The sequence at -35 (the -35 element) has the consensus sequence TTGACA. The above consensus sequences, while conserved...

Interferon regulatory factor 8 (IRF8) also known as interferon consensus sequence-binding protein (ICSBP), is a protein that in humans is encoded by the...

initiation. In prokaryotes, DUEs are found in the form of tandem consensus sequences flanking the 5' end of DnaA binding domain. The act of unwinding...

repeat identification involves building a consensus of each family of sequences. A consensus sequence is a sequence that is created based on the repeats that...

box or CAT box) is a distinct pattern of nucleotides with GGCCAATCT consensus sequence that occur upstream by 60–100 bases to the initial transcription site...

scores is the automatic determination of accurate, quality-based consensus sequences. Phred quality scores Q {\displaystyle Q} are logarithmically related...

Shine-Dalgarno sequence, the Kozak consensus sequence and the RNA polymerase III terminator. In bioinformatics, a sequence entropy, also known as sequence complexity...

mediator. Chelsky et al. proposed the consensus sequence K-K/R-X-K/R for monopartite NLSs. A Chelsky sequence may, therefore, be part of the downstream...

DNA for transcription to occur in bacteria. It is an idealized or consensus sequence—that is, it shows the most frequently occurring base at each position...

branchpoint is always an A; the consensus around this sequence varies somewhat. In humans the branch site consensus sequence is yUnAy. The branch site is...

box (consensus sequence TATAAA), which contains the stop codon TAA. Bacterial promoter elements at ~10 bases exhibits a TATA box with a consensus of TATAAT...

For multiple sequences the last row in each column is often the consensus sequence determined by the alignment; the consensus sequence is also often...

is sequenced several times in the same direction. If a consensus base is covered by both high-quality sequence and (discrepant) low-quality sequence, Phrap's...

proteins to specific intracellular or extracellular locations. While no consensus sequence has been identified for signal peptides, many nonetheless possess...

conditions. The inositol-sensitive upstream activation sequence (UASINO) has a consensus sequence 5'-CATGTGAAAT-3' and is present in the promoter regions...

functioning of the origin. Element A is highly conserved, consisting of the consensus sequence: 5'- T/A T T T A Y R T T T T/A -3' (where Y is either pyrimidine and...

established the scanning model of translation initiation and the Kozak consensus sequence. Her last publication was in 2008. Kozak was listed as one of the...

polymerase is directed to a specialized set of promoters with a different consensus sequence. Jang, Sei Heon; Jaehnings, Judith A. (1991). "The Yeast Mitochondrial...

attachment of a glycan residue to a protein requires the recognition of a consensus sequence. N-linked glycans are almost always attached to the nitrogen atom...

surrounded upstream and downstream by a favorable sequence known as the “Kozak consensus sequence” or “Kozak context”. (See A) Weak or absent Kozak context...

consensus sequence of E(E/L)PFPS. Additionally, for three other keratan sulfated proteoglycans, lumican, keratocan, and mimecan (OGN), the consensus sequence...

viruses than is offered by classical studies based on simplified consensus sequences. The quasispecies model is most applicable when the genome size is...

to a consensus sequence present within the coding sequences of at least some Bvg-repressed genes. Binding of this protein to the consensus sequence represents...