The Conserved Domain Database (CDD) is a database of well-annotated multiple sequence alignment models and derived database search models, for ancient...
6 KB (602 words) - 03:12, 21 April 2025
ProDom[permanent dead link] SMART NCBI Conserved Domain Database SUPERFAMILY Library of HMMs representing superfamilies and database of (superfamily and family)...
71 KB (8,443 words) - 16:27, 25 May 2025
transcription factors, may be conserved within a genome. For example, the promoter of a conserved gene or operon may also be conserved. As with proteins, nucleic...
48 KB (5,004 words) - 01:01, 29 April 2025
Simple Modular Architecture Research Tool (redirect from SMART (database))
protein domains in protein sequences. The most recent release of SMART contains 1,204 domain models. Data from SMART was used in creating the Conserved Domain...
3 KB (249 words) - 01:29, 17 August 2024
National Center for Biotechnology Information (redirect from NCBI taxonomy database)
database of NCBI contains 3D coordinate sets for experimentally determined structures in PDB that are imported by NCBI. The Conserved Domain database...
11 KB (1,233 words) - 14:07, 15 June 2025
cognitive tempo Conserved domain database, a collation of protein structural and functional motifs from several independent databases Craniodiaphyseal...
2 KB (256 words) - 14:42, 19 September 2023
identifiers, conserved domains, data base cross-references, LocusLink Identifiers and complete genomes are also available. BOND facilitates cross-database queries...
17 KB (2,263 words) - 15:11, 19 January 2024
acyl residues with 6 putative transmembrane segments (TMSs). The Conserved Domain Database (CDD) recognized two DUF204 repeats, each repeat having 3 TMSs...
4 KB (400 words) - 16:21, 22 May 2025
InterPro (category Protein databases)
Functional prediction and analysis of domain architectures is available from the Gene3D website. CDD Conserved Domain Database is a protein annotation resource...
19 KB (1,832 words) - 18:52, 13 February 2025
evolutionarily conserved Death Domain superfamily is defined by a death fold motif which is formed by several protein-interaction domains. The domains consist...
20 KB (2,089 words) - 13:33, 3 January 2025
ARDB (category Biological databases)
Orthologous Genes (COG) and Conserved Domain Database (CDD) annotations. It also contains links to external databases. The database is also for the identification...
3 KB (224 words) - 22:47, 6 February 2022
frequent are classified as TIGR03717 and TIGR03718, according to the Conserved domain database. Both TIGR03717 and TIGR03718 are homologous with the membrane-bound...
3 KB (331 words) - 01:28, 7 October 2024
conserved domain database. A representative list of proteins belonging to the T-A Hol family can be found in the Transporter Classification Database....
4 KB (406 words) - 07:47, 16 April 2022
AdoMet MTase (category Protein domains)
S-adenosylmethionine-dependent methyltransferase (SAM-MTase or AdoMet-MTase) is a conserved protein domain and protein superfamily. SAM-MTase proteins are methyltransferases...
4 KB (356 words) - 04:21, 28 May 2025
A total of 2,786 bacterial Pfam domains even occur in animals, including 320 DUFs. Many DUFs are highly conserved, indicating an important role in biology...
7 KB (881 words) - 22:55, 2 December 2023
associating domain (TAD) is 1000 kb in humans, 880 kb in mouse cells, and 140 kb in fruit flies. Boundaries at both side of these domains are conserved between...
32 KB (3,426 words) - 03:04, 18 November 2024
The protein kinase domain is a structurally conserved protein domain containing the catalytic function of protein kinases. Protein kinases are a group...
17 KB (1,562 words) - 22:44, 26 May 2025
acetylation is conserved in human CCDC42B. Human CCDC42B protein has conserved SUMOylation site, since lysine (K) at position 285 was conserved in 5 out of...
26 KB (2,150 words) - 01:27, 20 September 2024
binding domain (DBD) is a highly conserved domain found exclusively in transcription factors (≥40 species) (Pfam PF02362) combined with other domains (InterPro: IPR003340)...
8 KB (734 words) - 05:47, 5 February 2025
TRAPPC14 (section Composition and Domains)
this glycine-rich region to not be conserved in terms of specific glycine residue positions, but is well conserved in overall glycine content in mammals...
24 KB (1,836 words) - 04:56, 12 March 2025
Information, Conserved Protein Domain Family 7tmA_SREB1_GPR27, accessed 5 February 2022 IUPHAR GPCR Database - GPR27 (previously SREB1) IUPHAR GPCR Database - GPR85...
3 KB (180 words) - 13:17, 6 December 2024
array is conserved between these groups, referred to collectively as the TALE-likes. For a structural classification of DNA-binding-domains presents in...
20 KB (2,348 words) - 08:23, 1 June 2025
Aspartic protease (category Protein domains)
catalytic site motif, which is very conserved. The presence and position of disulfide bridges are other conserved features of aspartic peptidases. Aspartyl...
10 KB (1,011 words) - 23:19, 19 January 2025
cause of Carpenter syndrome subtype 2. A fairly highly conserved protein, MEGF8 has conserved orthologs from P. paniscus to N. vectensis. Orthologs are...
35 KB (3,523 words) - 13:53, 28 May 2025
Conservation law (redirect from Conserved property)
interval energy will not be conserved. A stronger form of conservation law requires that, for the amount of a conserved quantity at a point to change...
21 KB (2,509 words) - 06:59, 16 June 2025
Proser2 (section Conserved Regions)
of the short arm of chromosome 10 (10p14) and contains a highly conserved SARG domain. It is a fast evolving gene with two paralogs, c1orf116 and specifically...
20 KB (1,894 words) - 12:35, 14 February 2023
16S ribosomal RNA (section Ribosomal Database Project)
between hypervariable regions, with more conserved regions correlating to higher-level taxonomy and less conserved regions to lower levels, such as genus...
35 KB (3,931 words) - 15:00, 5 June 2025
Retrieved 23 April 2014. Marchler-Bauer A, et al. (2011). "CDD: A Conserved Domain Database for the functional annotation of proteins". Nucleic Acids Res...
14 KB (1,474 words) - 11:43, 15 November 2024