Guide RNA (gRNA) or single guide RNA (sgRNA) is a short sequence of RNA that functions as a guide for the Cas9-endonuclease or other Cas-proteins that...
30 KB (3,645 words) - 16:34, 15 May 2025
CRISPR gene editing (section RNA editing)
system. By delivering the Cas9 nuclease complexed with a synthetic guide RNA (gRNA) into a cell, the cell's genome can be cut at a desired location, allowing...
176 KB (20,510 words) - 18:56, 14 May 2025
Cas9 (section Interactions with sgRNA)
the 20 nucleotide spacer region of the guide RNA (gRNA). If the DNA substrate is complementary to the guide RNA, Cas9 cleaves the invading DNA. In this...
47 KB (5,898 words) - 04:47, 5 May 2025
nucleolar RNAs (snoRNAs) are a class of small RNA molecules that primarily guide chemical modifications of other RNAs, mainly ribosomal RNAs, transfer RNAs and...
31 KB (3,892 words) - 08:04, 7 October 2024
CRISPR activation (section Guide RNA)
See: Guide RNA, CRISPR A small guide RNA (sgRNA), or gRNA is an RNA with around 20 nucleotides used to direct Cas9 or dCas9 to their targets. gRNAs contain...
22 KB (2,739 words) - 08:03, 1 April 2025
Perturb-seq (category RNA sequencing)
each guide RNA to allow for all perturbations to be pooled together and later deconvoluted, with assignment of each phenotype to a specific guide RNA. Droplet-based...
22 KB (2,704 words) - 12:10, 9 May 2025
CRISPR (category Non-coding RNA)
precursor crRNAs (pre-crRNAs) into mature crRNAs. This eliminates the requirement for a trans-activating crRNA (tracrRNA), simplifying guide RNA design and...
123 KB (13,281 words) - 19:36, 12 May 2025
ribonucleic acid (RNA) molecules, microRNA (miRNA) and small interfering RNA (siRNA), are central to components to the RNAi pathway. Once mRNA is degraded,...
140 KB (15,409 words) - 12:05, 11 March 2025
well as stability of RNAs, and has been linked with human diseases. RNA editing has been observed in some tRNA, rRNA, mRNA, or miRNA molecules of eukaryotes...
61 KB (7,437 words) - 00:53, 7 March 2025
Prime editing (section Development of epegRNAs)
information that replaces the targeted sequence. The pegRNA consists of an extended single guide RNA (sgRNA) containing a primer binding site (PBS) and a reverse...
26 KB (3,062 words) - 19:35, 10 November 2024
The RNA world is a hypothetical stage in the evolutionary history of life on Earth in which self-replicating RNA molecules proliferated before the evolution...
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Protospacer adjacent motif (section GUIDE-Seq)
CRISPR-associated nuclease such as Cas9 attaches to a tracrRNA–crRNA complex, which guides Cas9 to the invading protospacer sequence. But Cas9 will not...
12 KB (1,421 words) - 00:22, 14 December 2022
Cas12a (CRISPR-associated protein 12a, previously known as Cpf1) is an RNA-guided endonuclease-exonuclease that forms an essential component of the CRISPR...
14 KB (1,632 words) - 21:09, 27 February 2025
platforms and bioinformatics tools used to facilitate the design of guide RNAs (gRNAs) for use with the CRISPR/Cas gene editing system. The CRISPR/Cas (clustered...
16 KB (1,283 words) - 21:43, 2 January 2025
transfer RNA (tRNA), microRNA (miRNA), small interfering RNA (siRNA), small nucleolar RNA (snoRNAs), Piwi-interacting RNA (piRNA), tRNA-derived small RNA (tsRNA)...
65 KB (7,626 words) - 03:10, 6 May 2025
CRISPR systems crRNA and tracrRNA (trans-activating CRISPR RNA) can form a complex known as the guide RNA or gRNA. The crRNA within the gRNA is what matches...
10 KB (1,149 words) - 21:43, 2 January 2025
difficult, if not impossible, to retarget. An RNA-guided endonuclease (e.g., Cas9 or Cas12a) and its guide RNA, which can be easily altered to set the target...
47 KB (5,126 words) - 06:02, 28 March 2025
for the different types of RNA are listed and explained. List of cis-regulatory RNA elements RNA: Types of RNA Non-coding RNA Gribaldo S, Brochier-Armanet...
20 KB (1,022 words) - 10:17, 2 November 2024
Off-target genome editing (section GUIDE-Seq)
found that greater than 50% of RNA-guided endonuclease-induced mutations were not occurring on-target. The Cas9 guide RNA (gRNA) recognizes a 20 bp target...
55 KB (7,122 words) - 04:03, 28 April 2025
hydroxymethylated and glucosyl-hydroxymethylated DNA Type V enzymes utilize guide RNAs (gRNAs) Type I restriction enzymes were the first to be identified and were...
55 KB (5,856 words) - 08:25, 13 May 2025
DNA into RNA and combines this RNA with Cas9 proteins to make double-stranded breaks in the invading viral DNA. The RNA serves as a guide RNA to direct...
55 KB (6,765 words) - 11:43, 11 December 2024
Central dogma of molecular biology (redirect from DNA makes RNA makes protein)
in RNA silencing. RNA editing, in which an RNA sequence is altered by a complex of proteins and a "guide RNA", could also be seen as an RNA-to-RNA transfer...
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(snRNPs or snurps). ScaRNAs guide the modification (methylation and pseudouridylation) of RNA polymerase II transcribed spliceosomal RNAs U1, U2, U4, U5 and...
6 KB (605 words) - 06:58, 12 September 2022
CRISPR-Cas9 gene editing system, coupled with libraries of single guide RNAs (sgRNAs), which are designed to target every gene in the genome. Over recent...
55 KB (6,172 words) - 16:13, 31 October 2024
levels. Using single-stranded RNA (ssRNA) fragments, such as microRNA (miRNA), or double-stranded small interfering RNA (siRNA), the complex functions as...
36 KB (3,842 words) - 17:13, 25 November 2024
the liver a two-part genome editing system: guide RNA specific to the disease-causing gene and messenger RNA that encodes the Cas9 enzyme, which carries...
18 KB (1,662 words) - 16:31, 12 February 2025
Functional genomics (section At the RNA level)
genomic and transcriptomic projects (such as genome sequencing projects and RNA sequencing). Functional genomics focuses on the dynamic aspects such as gene...
32 KB (4,013 words) - 04:45, 28 May 2024
mitochondria-derived kinetoplast of trypanosomes, minicircles encode guide RNAs for RNA editing. In Amphidinium, the chloroplast genome is made of minicircles...
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mobile element–guided activity (OMEGA) proteins including IscB, IsrB and TnpB as endonucleases found in transposons, and guided by small ωRNAs. Genetic engineering...
78 KB (9,365 words) - 16:31, 10 May 2025
Small nuclear RNA (snRNA) is a class of small RNA molecules that are found within the splicing speckles and Cajal bodies of the cell nucleus in eukaryotic...
18 KB (2,335 words) - 16:05, 28 November 2024