This list of phylogenetic tree viewing software is a compilation of software tools and web portals used in visualizing phylogenetic trees. 1 "All" refers...
24 KB (1,622 words) - 19:12, 5 February 2024
UPGMA, Bayesian phylogenetic inference, maximum likelihood and distance matrix methods. List of phylogenetic tree visualization software Patterson N, Moorjani...
34 KB (1,660 words) - 01:07, 29 February 2024
A phylogenetic tree, phylogeny or evolutionary tree is a graphical representation which shows the evolutionary history between a set of species or taxa...
29 KB (3,061 words) - 16:43, 26 March 2024
of phylogenetic tree visualization software Category:Metagenomics_software Structural biology software List of molecular graphics systems List of protein-ligand...
2 KB (174 words) - 17:53, 9 February 2024
OneZoom (category Phylogenetics software)
with unknown extinction risk. List of phylogenetic tree visualization software Gross, Michael (2022-01-24). "A family tree of everything alive". Current...
4 KB (305 words) - 04:17, 13 August 2023
some of which compute phylogenetic networks List of programs for phylogenetic network reconstruction, evaluation, visualization, etc. SplitsTree Dendroscope...
10 KB (1,034 words) - 17:56, 20 October 2023
arrangement of conserved residues and functional domains. Phylogenetic tree visualization: Phylogenetic tree visualization tools, such as FigTree and iTOL...
62 KB (6,665 words) - 02:26, 8 May 2024
Dendroscope (category Phylogenetics software)
at the University of Tübingen in Germany, who also created SplitsTree. List of phylogenetic tree visualization software SplitsTree MEGAN Huson, Daniel...
2 KB (142 words) - 18:42, 3 December 2023
List of sequence alignment software List of alignment visualization software List of phylogenetics software List of phylogenetic tree visualization software...
33 KB (3,886 words) - 09:22, 9 May 2024
subsection of the list of sequence alignment software. Multiple alignment visualization tools typically serve four purposes: Aid general understanding of large-scale...
22 KB (183 words) - 01:41, 22 August 2023
Graph drawing (redirect from Graph visualization)
drawing is an area of mathematics and computer science combining methods from geometric graph theory and information visualization to derive two-dimensional...
31 KB (3,269 words) - 21:08, 9 May 2024
tips of a phylogenetic tree can be living taxa or fossils, and represent the "end" or the present time in an evolutionary lineage. A phylogenetic diagram...
57 KB (6,605 words) - 10:50, 27 April 2024
alignment software List of open-source healthcare software List of biomedical cybernetics software List of freeware health software List of genetic engineering...
11 KB (91 words) - 03:52, 26 March 2024
approaches involved in phylogenetic analyses. The goal is to find a phylogenetic tree representing optimal evolutionary ancestry between a set of genes, species...
64 KB (8,072 words) - 15:13, 15 May 2024
Centre for Genomic Pathogen Surveillance (category Computational phylogenetics)
Data Institute, Nuffield Department of Medicine, University of Oxford List of phylogenetic tree visualization software Microbial Genomics Ineos Oxford Institute...
9 KB (746 words) - 07:42, 19 December 2023
Diagram (section Gallery of diagram types)
symbolic representation of information using visualization techniques. Diagrams have been used since prehistoric times on walls of caves, but became more...
16 KB (1,060 words) - 15:20, 15 May 2024
Sequence alignment (category Computational phylogenetics)
and phylogenetic trees score and sort trees first and calculate a multiple sequence alignment from the highest-scoring tree. Commonly used methods of phylogenetic...
56 KB (6,899 words) - 16:10, 6 April 2024
Molecular Evolutionary Genetics Analysis (redirect from MEGA (software))
Analysis (MEGA) is computer software for conducting statistical analysis of molecular evolution and for constructing phylogenetic trees. It includes many sophisticated...
33 KB (3,539 words) - 18:05, 1 May 2024
UGENE (category Phylogenetics software)
a phylogenetic tree, and so on. The Phylogenetic Tree Viewer helps to visualize and edit phylogenetic trees. It is possible to synchronize a tree with...
16 KB (1,486 words) - 14:55, 3 April 2024
BLAST (biotechnology) (category Phylogenetics software)
within the sequence of interest. Establishing phylogeny Using the results received through BLAST you can create a phylogenetic tree using the BLAST web-page...
40 KB (5,239 words) - 08:28, 17 May 2024
descended Phylogenetic tree – Branching diagram of evolutionary relationships between organisms Phylogenetic network – Graph used to visualize evolutionary...
26 KB (4,674 words) - 11:05, 28 February 2024
Pan-genome (section Software tools)
of software developed to analyze pangenomes: Those dedicated to cluster homologous genes; identify SNPs; plot pangenomic profiles; build phylogenetic...
50 KB (5,348 words) - 02:51, 8 April 2024
Biopython (category Bioinformatics software)
visualising phylogenetic trees. A variety of file formats are supported for reading and writing, including Newick, NEXUS and phyloXML. Common tree manipulations...
18 KB (1,777 words) - 17:10, 6 January 2024
Taxonomy (category Types of groupings)
intrinsic tree structure), but not all are. Originally, taxonomy referred only to the categorisation of organisms or a particular categorisation of organisms...
29 KB (3,245 words) - 11:08, 24 April 2024
computer software program, written in Java, for viewing, editing, and analyzing phylogenetic trees. This type of program can be used for a variety of analyses...
2 KB (140 words) - 04:13, 2 December 2023
Conserved sequence (redirect from Phylogenetically conserved)
back up the phylogenetic tree, and hence far back in geological time. Examples of highly conserved sequences include the RNA components of ribosomes present...
47 KB (4,982 words) - 00:49, 3 March 2024
imaging and analysis software), OMA (Orthology Matrix), V-pipe (viral genomics pipeline), DeepView/Swiss-PdbViewer (protein visualization, modelling and analysis)...
11 KB (1,135 words) - 03:11, 15 December 2023
This list of RNA structure prediction software is a compilation of software tools and web portals used for RNA structure prediction. The single sequence...
152 KB (8,423 words) - 21:37, 26 April 2024
Computational biology (redirect from Open source software for computational biology)
evolutionary biology by: Using DNA data to reconstruct the tree of life with computational phylogenetics Fitting population genetics models (either forward time...
33 KB (3,782 words) - 00:57, 3 April 2024
Generic Model Organism Database (category Bioinformatics software)
provides biological research communities with a toolkit of open-source software components for visualizing, annotating, managing, and storing biological data...
15 KB (956 words) - 07:27, 29 April 2024