SOAP (Short Oligonucleotide Analysis Package) is a suite of bioinformatics software tools from the BGI Bioinformatics department enabling the assembly...
12 KB (970 words) - 21:41, 23 February 2025
Soap (disambiguation) (category Short description is different from Wikidata)
often abbreviated S.O.A.P. Short Oligonucleotide Analysis Package, a bioinformatics package used for the assembly and analysis of DNA sequences SOAP ("Simplify...
2 KB (303 words) - 03:22, 1 December 2024
Genome project (category Articles with short description)
sequencing centers has increased. An example of such assembler Short Oligonucleotide Analysis Package developed by BGI for de novo assembly of human-sized genomes...
18 KB (1,822 words) - 23:45, 28 April 2025
List of RNA-Seq bioinformatics tools (category Articles with short description)
performance than BWA-backtrack for 70-100bp Illumina reads. Short Oligonucleotide Analysis Package (SOAP) GNUMAP performs alignment using a probabilistic Needleman–Wunsch...
164 KB (20,394 words) - 15:59, 20 May 2025
BGI Group (category Articles with short description)
Analyzer, during de novo sequencing. SOAPdenovo is part of "Short Oligonucleotide Analysis Package" (SOAP), a suite of tools developed by BGI for de novo assembly...
77 KB (6,127 words) - 05:31, 2 June 2025
associations, and thus to mineralisation. Factor analysis can be used for summarizing high-density oligonucleotide DNA microarrays data at probe level for Affymetrix...
72 KB (10,024 words) - 16:28, 25 May 2025
CITE-Seq (category Articles with short description)
portion for analysis of the sequencing data obtained. The most crucial part in the wet lab experiments is designing the antibody-oligonucleotide conjugates...
18 KB (2,326 words) - 14:55, 30 December 2023
Duchenne muscular dystrophy (category Articles with short description)
(Translarna) is approved for use in the European Union. The antisense oligonucleotide golodirsen (Vyondys 53) was approved for medical use in the United...
68 KB (6,827 words) - 20:40, 29 May 2025
Sanger sequencing (category Articles with short description)
sequence analysis. Fluorescence detection of the DNA fragments is accomplished by means of a fluorophore covalently attached to the oligonucleotide primer...
28 KB (3,350 words) - 19:28, 12 May 2025
Casimersen (category Articles with short description)
Casimersen, sold under the brand name Amondys 45, is an antisense oligonucleotide medication used for the treatment of Duchenne muscular dystrophy (DMD)...
11 KB (760 words) - 20:17, 29 May 2025
Commonly used genomic signatures include nucleotide composition, oligonucleotide frequencies, or structural features of the genome. To detect HGT using...
79 KB (8,981 words) - 18:21, 11 May 2024
Transcriptomics technologies (redirect from Transcriptome analysis)
(November 2005). "Analysis of chromosome breakpoints in neuroblastoma at sub-kilobase resolution using fine-tiling oligonucleotide array CGH". Genes,...
120 KB (12,519 words) - 13:36, 25 January 2025
In silico PCR (category Articles with short description)
H. (2011). "Java web tools for PCR, in silico PCR, and oligonucleotide assembly and analysis". Genomics. 98 (2): 137–144. doi:10.1016/j.ygeno.2011.04...
8 KB (867 words) - 01:06, 25 December 2024
DNA sequencing (redirect from Base sequence analysis)
(1972). "Nucleotide sequence analysis of DNA. IX. Use of oligonucleotides of defined sequence as primers in DNA sequence analysis". Biochem. Biophys. Res....
136 KB (15,496 words) - 05:38, 2 June 2025
FASTA (category Articles with short description)
for protein sequences and kmer=4 or 6 for nucleotide sequences. Short oligonucleotides are usually run with k-mer= 1. The program then finds all similar...
11 KB (1,464 words) - 18:53, 10 January 2025
ChIP-on-chip (category Articles with short description)
Weissman, S.; Snyder, M.; Gerstein, M. (2005). "Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping". Trends in Genetics...
25 KB (3,057 words) - 05:34, 12 December 2023
Bio-MEMS (section Oligonucleotide chips)
previous step. This process can be repeated to synthesize oligonucleotides of relatively short lengths on the surface, nucleotide by nucleotide. Using inkjet...
93 KB (9,857 words) - 07:17, 13 August 2024
Rafael Irizarry (scientist) (category Articles with short description)
the 'affy' package for the analysis of Affymetrix microarray data. Irizarry is the developer and instructor for the online Data Analysis for Life Sciences...
12 KB (806 words) - 19:06, 25 October 2023
Polydimethylsiloxane (category Articles with short description)
ISBN 978-0-7923-8739-8. Evaluation of sustained release of antisense oligonucleotide from poly DL (lactide-co-glycolide) microspheres targeting fibrotic...
39 KB (4,365 words) - 17:29, 22 May 2025
Microarray (redirect from Microarray analysis)
of microarrays include: DNA microarrays, such as cDNA microarrays, oligonucleotide microarrays, BAC microarrays and SNP microarrays MMChips, for surveillance...
15 KB (1,691 words) - 21:08, 4 June 2025
DNA (category Articles with short description)
DNA and other nucleic acids are the basis of aptamers, synthetic oligonucleotide ligands for specific target molecules used in a range of biotechnology...
167 KB (17,915 words) - 22:22, 29 May 2025
Coliform bacteria (category Articles with short description)
areas of the 16S rRNA in the Enterobacteriaceae genus are bound by oligonucleotide probes, which aids in monitoring the quality of drinking water. Specifically...
16 KB (1,881 words) - 14:21, 24 May 2025
PCA (category Short description is different from Wikidata)
count agar in microbiology Polymerase cycling assembly, for large DNA oligonucleotides Posterior cerebral artery Posterior cortical atrophy, a form of dementia...
4 KB (418 words) - 15:21, 27 May 2025
Multiple cloning site (category Articles with short description)
can be added to a vector. The first step is designing complementary oligonucleotide sequences that contain restriction enzyme sites along with additional...
34 KB (3,833 words) - 19:47, 22 May 2025
Autonomous detection system (category Articles with short description)
"US5667972A - Method of sequencing of genoms by hybridization of oligonucleotide probes". Google Patents. 5 June 1995. Retrieved 11 September 2020....
14 KB (1,448 words) - 13:57, 6 October 2023
Hexafluoro-2-propanol (category Articles with short description)
J.A.; Fischer, S.; Lichtenwalter, K.; Hancock, W.S. (1997). "Analysis of oligonucleotides by HPLC-electrospray ionization mass spectrometry". Anal. Chem...
10 KB (865 words) - 11:22, 30 April 2025
molecule (referred to as the "scaffold") and folded it into short, single-stranded DNA oligonucleotides (referred to as "staples"). This revolution allowed for...
10 KB (1,273 words) - 03:44, 27 May 2025
Rolling circle replication (category Articles with short description)
antibodies used in immuno-RCA reaction are modified by attaching a ssDNA oligonucleotide on the end of the heavy chains. So the Fab (Fragment, antigen binding)...
24 KB (2,920 words) - 00:14, 26 May 2025
Gene expression profiling (category Articles with short description)
using Affymetrix oligonucleotide microarrays". OMICS. 10 (4): 555–66. doi:10.1089/omi.2006.10.555. PMID 17233564. "Significance Analysis of Microarrays"...
30 KB (4,009 words) - 20:56, 29 May 2025
Hypercycle (chemistry) (category Articles with short description)
fragments, akin to a recombination of Azoarcus ribozyme from four inactive oligonucleotide fragments described earlier. Apart from a substantial contribution...
61 KB (7,860 words) - 10:56, 1 March 2025