The Plant Proteome Database is a National Science Foundation-funded project to determine the biological function of each protein in plants. It includes...
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Bioinformatics List of omics topics in biology Plant Proteome Database Transcriptome Interactome Human Proteome Project BioPlex Human Protein Atlas Johnson...
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Proteomics (redirect from Human Proteome Resource)
infection, and hormones that send important signals throughout the body. The proteome is the entire set of proteins produced or modified by an organism or system...
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look for similar proteins in the Uniprot database with annotation on subcellular localization information. Proteome Analyst then uses a machine-learned classifier...
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Metabolome (section The Human Metabolome Database)
complete set of genes (the genome), the complete set of proteins (the proteome) and the complete set of transcripts (the transcriptome). The first book...
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and secreted into the extracellular space. In humans, this subset of the proteome encompasses 13-20% of all proteins, including cytokines, growth factors...
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Garlic (redirect from Garlic (plant))
fertility: transcriptome and proteome analyses provide insight into flower and pollen development". Frontiers in Plant Science. 6: 271. Bibcode:2015FrPS...
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Transcriptome (section Relation to proteome)
other -ome based biological fields of study; it is complementary to the proteome and the metabolome and encompasses the translatome, exome, meiome and...
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Frankia (section Symbiont plants)
(2017-04-16). "Salt stress–induced changes in antioxidative defense system and proteome profiles of salt-tolerant and sensitive Frankia strains". Journal of Environmental...
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database. There are also several subcellular location databases with computational predictions, such as the fungal secretome and subcellular proteome...
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Thylakoid (category Plant anatomy)
Thylakoid Membrane Proteome of Arabidopsis thaliana Chloroplasts: New Proteins, New Functions, and a Plastid Proteome Database". Plant Cell. 16 (2): 478–99...
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Nepenthes (redirect from Tropical pitcher plant)
(/nɪˈpɛnθiːz/ nih-PEN-theez) is a genus of carnivorous plants, also known as tropical pitcher plants, or monkey cups, in the monotypic family Nepenthaceae...
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Biobase (company) (category Database providers)
The early flagship of Proteome was the Yeast Proteome Database (YPD), which was complemented by a number of similar databases. Their latest achievement...
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Protein (section Databases and projects)
ISBN 978-0-19-963789-8. Kozlowski LP (January 2017). "Proteome-pI: proteome isoelectric point database". Nucleic Acids Research. 45 (D1): D1112 – D1116. doi:10...
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Medicago truncatula (category Plant models)
2305/IUCN.UK.2016-3.RLTS.T176489A19401776.en. NRCS. "Medicago truncatula". PLANTS Database. United States Department of Agriculture (USDA). Retrieved 28 January...
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1099/00207713-52-4-1155. PMID 12148621. Tolonen, AC; Haas, W; et, al (Jan 2011). "Proteome-wide systems analysis of a cellulosic biofuel-producing microbe". Molecular...
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the metabolome and the other cellular ensembles (genome, transcriptome, proteome, and lipidome), which can be used to predict metabolite abundances in biological...
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Arabidopsis thaliana (category Plant models)
reference proteome. The plastome of A. thaliana is a 154,478 base-pair-long DNA molecule, a size typically encountered in most flowering plants (see the...
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List of mass spectrometry software (redirect from MassBank (database))
Peptide Search Engine Integrated into the MaxQuant Environment". Journal of Proteome Research. 10 (4): 1794–1805. doi:10.1021/pr101065j. ISSN 1535-3893. PMID 21254760...
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Interactome (section Interactome databases)
the management and the analysis of proteome-wide virus-host interaction networks". Nucleic Acids Res. 37 (Database issue): D661–8. doi:10.1093/nar/gkn794...
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Bacillus thuringiensis (section Proteome)
and the methyl-accepting chemotaxis protein BC5034. It has a similar proteome diversity to its close relative B. cereus. Into the BT Cotton protein is...
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from five plant families and their proteomes, for which WCG was used in the creation of over 29,000 protein structures; a paper on the proteome of Saccharomyces...
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Corn smut (category Fungal plant pathogens and diseases)
Corn smut is a plant disease caused by the pathogenic fungus Mycosarcoma maydis, synonym Ustilago maydis. One of several cereal crop pathogens called...
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wild-type gene. Two independent evolutionary analyses of the peroxisomal proteome found homologies between the peroxisomal import machinery and the ERAD...
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set of 1,733 Fold superfamily domains (FSF) in use of a comparison of proteomes and functionomes for to identify the origin of cellular diversification...
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Streptomyces (section Plant pathogenic bacteria)
GC content varies from 68.8-74.7% (average: 71.7%). The 95% soft-core proteome of the genus consists of approximately 2000-2400 proteins. The pangenome...
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Systems biology (section Tools and database)
insights and its focus on the metabolome, fluxome, transcriptome, and/or proteome. Top-down methods prioritize overall system states as influencing factors...
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Helicobacter pylori (section Proteome)
start codons as the consensus Shine–Dalgarno sequence in H. pylori. The proteome of H. pylori has been systematically analyzed, and more than 70% of its...
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Potyvirus (category Viral plant pathogens and diseases)
formed during Potato virus A infection: PVA replication complex proteome". Molecular Plant Pathology. 17 (6): 943–958. doi:10.1111/mpp.12341. PMC 6638329...
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