Tetraloops are a type of four-base hairpin loop motifs in RNA secondary structure that cap many double helices. There are many variants of the tetraloop...

interactions. Tetraloop-receptor interactions combine base-pairing and stacking interactions between the loop nucleotides of a tetraloop motif and a receptor...

adenosine residue of the helix 6 GNAR tetraloop motif. The SRP RNAs of eukaryotes and Archaea have a GNAR tetraloop (N is for any nucleotide, R is for a...

commonly stabilize loops, junctions, and recurrent 3D motifs such as GNRA tetraloops. Non-canonical base pairs are often located in loops, bulges, and junctions...

of triplet repeats is odd or even. An even number of repeats forms a tetraloop structure, while an odd number leads to the formation of a triloop. In...

region called the 'loop'. A tetraloop is a four-base pairs hairpin RNA structure. There are three common families of tetraloop in ribosomal RNA: UNCG, GNRA...

are unstable. One common loop with the sequence UUCG is known as the "tetraloop," and is particularly stable due to the base-stacking interactions of...

group of adenine bases binding to each other in a bulge, or the GNRA tetraloop that has a guanine–adenine base-pair. The chemical structure of RNA is...

crystal structures, as exemplified by the determination of an isolated tetraloop-receptor motif structure published in 1997. Investigations such as this...

interaction loop of domain 3 is known as GNRA tetraloop. The residues of adenosines A180 and A181 in the GUAA tetraloop form hydrogen bonds via non canonical...

(2000). "Solution structure of Cobalt(III)hexammine complexed to the GAAA tetraloop, and metal-ion binding to G.A mismatches". J. Mol. Biol. 295 (5): 1211–1232...

shown that the apical loop to be capped by a stable well-structured UGUU tetraloop. HBV RNA encapsidation signal epsilon "Rfam: Family: AHBV_epsilon (RF01313)"...

structure that was discovered by bioinformatics. Energetically stable tetraloops often occur in this motif. The Methylophilales-1 motif is found in Methylophilales...

Each domain contains normal secondary structure (e.g., base triple, tetraloop, cross-strand purine stack) and is also highly symmetric in tertiary structure;...

number of tertiary contacts between motifs, including kissing-loop and tetraloop-receptor interactions. In 2005, A. De Lencastre et al. found that during...

Cas9 endonuclease activity. These two components are linked by a short tetraloop structure, resulting in the formation of the sgRNA. The tracrRNA consist...

these elements or combinations of them can be further classified, e.g. tetraloops, pseudoknots and stem loops. There are many secondary structure elements...

further classified into additional categories including, for example, tetraloops, pseudoknots, and stem-loops. Topological approaches can be used to categorize...

structure that was discovered by bioinformatics. Energetically stable tetraloops often occur in this motif. Proteo-phage-1 motif RNAs are found in Pseudomonadota...

contain terminal loops conforming to the stable UNCG tetraloop, but the DNA version of this tetraloop (TNCG) is not especially stable. The STAXI motif consists...

Betaproteobacteria, and Thermodesulfobacteriota. Energetically stable tetraloops often occur in this motif. COG3860 motif RNAs likely function as cis-regulatory...

terminus of the stem designated as "P2" very often conforms to highly stable tetraloop motifs that were previously elucidated, conforming to the consensus GNRA...

from base pairing, and many stem-loops are terminated by the stable UNCG tetraloop. Most of the conserved nucleotides in the motif participate in standard...

structure that was discovered by bioinformatics. Energetically stable tetraloops often occur in this motif. Parabacteroides-1 motif RNAs are found in Parabacteroides...

alpha-sarcin toxin that targets it. The targeted bond is located within the GAGA tetraloop of the RNA in between a guanine and adenine nucleotide. Other ribotoxins...

structure that was discovered by bioinformatics. Energetically stable tetraloops often occur in this motif. Prevotella-2 motif RNAs are found in the bacterial...

by a novel three-helix bundle fold. SLBP proteins also recognize the tetraloop structure of the histone hairpin, the base of the stem, and the 5' flanking...

stem-loops (see diagram), the second of which is often terminated by a CUUG tetraloop, which is an energetically favorable RNA sequence. Whalefall-1 RNAs are...

sequence GCGA, and these sequences might in some cases form stable GNRA tetraloops. Since the two stem-loops are somewhat distant from one another it is...

structure that was discovered by bioinformatics. Energetically stable tetraloops often occur in this motif. sul1 motif RNAs are found in Alphaproteobacteria...