BioPerl is a collection of Perl modules that facilitate the development of Perl scripts for bioinformatics applications. It has played an integral role...
12 KB (1,195 words) - 13:31, 10 March 2025
The BioRuby project was first started in 2000 by Toshiaki Katayama as a Ruby implementation of similar bioinformatics packages such as BioPerl and BioPython...
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including: BioJava – Java toolkit BioMOBY – Data and application execution through web services BioPerl – Perl toolkit BioPython – Python toolkit BioRuby –...
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1101/gr.361602. PMC 187536. PMID 12368254. Anon (2013). "Ewan Birney - BioPerl". bioperl.org. Archived from the original on 12 December 2012. Bateman, A.;...
55 KB (4,287 words) - 15:17, 16 May 2025
BioJava are BioPython, BioPerl, BioRuby, EMBOSS etc. In October 2012, the first paper on BioJava was published. This paper detailed BioJava's modules...
33 KB (4,099 words) - 10:35, 19 March 2025
Perl is a high-level, general-purpose, interpreted, dynamic programming language. Though Perl is not officially an acronym, there are various backronyms...
99 KB (9,792 words) - 10:29, 27 July 2025
F-statistics QST_(genetics) Coefficient of inbreeding Coefficient of relationship Hardy-Weinberg principle Wahlund effect BioPerl - Bio::PopGen::PopStats...
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Raku (programming language) (redirect from Niecza Perl 6)
Raku is a member of the Perl family of programming languages. Formerly named Perl 6, it was renamed in October 2019. Raku introduces elements of many...
48 KB (5,611 words) - 11:44, 30 July 2025
Sanger, Solexa and Illumina 1.3+) BioPerl version 1.6.1 onwards (interconverts Sanger, Solexa and Illumina 1.3+) BioRuby version 1.4.0 onwards (interconverts...
32 KB (3,674 words) - 07:51, 19 July 2025
computation of Tajima's D MEGA4 or MEGA5 Bio::PopGen::Statistics Archived 2014-02-22 at the Wayback Machine in BioPerl A video explanation of Tajima's D, and...
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implementation of similar bioinformatics packages such as BioPerl and BioPython and BioRuby. BioPHP was developed in December 2005 by Joseba Bikandi at the...
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Bioinformatics (redirect from Bio informatics)
bioinformatics software includes Bioconductor, BioPerl, Biopython, BioJava, BioJS, BioRuby, Bioclipse, EMBOSS, .NET Bio, Orange with its bioinformatics add-on...
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Wikipedia. Comparison of software for molecular mechanics modeling Earth BioGenome Project List of sequence alignment software List of open-source healthcare...
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include AWK and Perl. sh – the Bourne shell, a command-line shell for Unix. Anti-Spam SMTP Proxy AxKit BackupPC Big Medium BioMOBY BioPerl Bonsai Bricolage...
31 KB (3,908 words) - 06:40, 20 May 2025
It also has many useful basic tools and applications such as: Perl (including BioPerl modules) PHP APACHE II MySQL OpenOffice.org KPDF Reader Mozilla...
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Langer Index of biotechnology articles Earth BioGenome Project BioPerl, BioJava, BioJS, Biopython, BioRuby - libraries and modules that facilitate the...
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(more specifically Minimo) and Tigr Assembler v2. ACE format specification BioPerl IO module for ACE Contig representation in several assembly formats v t...
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processing. AlphaFold - deep learning protein folding BioPerl, BioJava, BioJS, Biopython, BioRuby - libraries and modules that facilitate the development...
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Apache-2.0 BioPerl Perl GPL-1.0 CPAN Perl Artistic-1.0 CGI.pm Perl Artistic License 2.0 or GPL DBIx::Class Perl MIT Gtk2-Perl Perl LGPL Mojolicious Perl MIT...
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packages which provide this conversion functionality, such as BioPython, BioRuby and BioPerl. The SAM/BAM files use the CIGAR (Compact Idiosyncratic Gapped...
57 KB (6,913 words) - 04:44, 15 July 2025
Biostrings::pairwiseAlignment Dynamic programming Both Both + Ends-free P. Aboyoun 2008 BioPerl dpAlign Dynamic programming Both Both + Ends-free Y. M. Chan 2003 BLASTZ...
70 KB (2,364 words) - 17:48, 23 June 2025
Stein, L. D.; Stupka, E.; Wilkinson, M. D.; Birney, E. (2002). "The BioPerl Toolkit: Perl Modules for the Life Sciences". Genome Research. 12 (10): 1611–1618...
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Free and open-source software portal Biology portal BioJava, Biopython, BioRuby, BioPHP, BioPerl, Bioconductor Open Bioinformatics Foundation Corpas;...
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Sciences 2012". Archived from the original on 2013-01-12. "Suzi Lewis - BioPerl". Archived from the original on 2012-02-05. "Berkeley Drosophila Genome...
16 KB (1,134 words) - 05:39, 3 December 2023
Lincoln Stein (category Perl people)
Stein, L. D.; Stupka, E.; Wilkinson, M. D.; Birney, E. (2002). "The BioPerl Toolkit: Perl Modules for the Life Sciences". Genome Research. 12 (10): 1611–1618...
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and/or adopting GMOD components for model organism databases. Bioperl, BioJava, Biopython, BioRuby, etc. Ensembl Gene Ontology DAS Genomics Unified Schema...
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Fosse, American choreographer, director (d. 1987) June 24 – Martin Lewis Perl, American physicist, Nobel Prize laureate (d. 2014) June 27 – Cino Tortorella...
116 KB (10,996 words) - 17:26, 25 July 2025
Tom Christiansen (category Perl writers)
Christiansen Perl Consultancy". Manta. "O'Reilly bio for Tom Christiansen". O'Reilly Media. Mark Jason Dominus. "Higher-Order Perl - Preface". "PerlTimeline"...
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Biofeedback (redirect from Bio feedback)
measuring bio-impedance. Changes in bio-impedance are generated by blood volume and blood flow and registered by a rheographic device. The pulsative bio-impedance...
132 KB (15,454 words) - 17:21, 17 July 2025