BioPerl is a collection of Perl modules that facilitate the development of Perl scripts for bioinformatics applications. It has played an integral role...
12 KB (1,192 words) - 01:25, 25 April 2024
Perl is a high-level, general-purpose, interpreted, dynamic programming language. Though Perl is not officially an acronym, there are various backronyms...
101 KB (9,761 words) - 19:07, 19 May 2024
The BioRuby project was first started in 2000 by Toshiaki Katayama as a Ruby implementation of similar bioinformatics packages such as BioPerl and BioPython...
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Raku (programming language) (redirect from Niecza Perl 6)
Raku is a member of the Perl family of programming languages. Formerly known as Perl 6, it was renamed in October 2019. Raku introduces elements of many...
47 KB (5,497 words) - 08:51, 27 May 2024
Chicago, 1969 A haplotype map of the human genome, The International HapMap Consortium, Nature 2005 Genetic distance BioPerl - Bio::PopGen::PopStats...
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including: BioJava – Java toolkit BioMOBY – Data and application execution through web services BioPerl – Perl toolkit BioPython – Python toolkit BioRuby –...
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BioJava are BioPython, BioPerl, BioRuby, EMBOSS etc. In October 2012, the first paper on BioJava was published. This paper detailed BioJava's modules...
33 KB (4,098 words) - 17:33, 18 January 2024
Do-it-yourself biology (redirect from DIY bio)
large bioinformatics libraries. Examples include BioPerl or BioPython, which use the languages Perl and Python, respectively. Genetic Engineers are a...
29 KB (2,969 words) - 06:08, 1 April 2024
1101/gr.361602. PMC 187536. PMID 12368254. Anon (2013). "Ewan Birney - BioPerl". bioperl.org. Archived from the original on 12 December 2012. Bateman, A.;...
54 KB (4,248 words) - 21:50, 28 December 2023
Bioinformatics (redirect from Bio informatics)
bioinformatics software includes Bioconductor, BioPerl, Biopython, BioJava, BioJS, BioRuby, Bioclipse, EMBOSS, .NET Bio, Orange with its bioinformatics add-on...
133 KB (8,431 words) - 16:15, 27 May 2024
Sanger, Solexa and Illumina 1.3+) BioPerl version 1.6.1 onwards (interconverts Sanger, Solexa and Illumina 1.3+) BioRuby version 1.4.0 onwards (interconverts...
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Open Bioinformatics Foundation BioPerl Perl language toolkit Cross-platform Artistic, GPL Open Bioinformatics Foundation BioPHP PHP language toolkit with...
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Larry Wall (category Perl writers)
computer programmer, linguist and author. He is best known for creating the Perl programming language and the patch tool. Wall grew up in Los Angeles and...
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It also has many useful basic tools and applications such as: PERL (including BioPerl modules) PHP Apache 2 MySQL OpenOffice.org KPDF Reader Mozilla...
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(more specifically Minimo) and Tigr Assembler v2. ACE format specification BioPerl IO module for ACE Contig representation in several assembly formats v t...
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Python3 package for computation of Tajima's D MEGA4 or MEGA5 Bio::PopGen::Statistics in BioPerl A video explanation of Tajima's D, and its application to...
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packages which provide this conversion functionality, such as BioPython, BioRuby and BioPerl. The SAM/BAM files use the CIGAR (Compact Idiosyncratic Gapped...
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include AWK and Perl. sh – the Bourne shell, a command-line shell for Unix. Anti-Spam SMTP Proxy AxKit BackupPC Big Medium BioMOBY BioPerl Bonsai Bricolage...
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Free and open-source software portal Biology portal BioJava, Biopython, BioRuby, BioPHP, BioPerl, Bioconductor Open Bioinformatics Foundation Corpas;...
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implementation of similar bioinformatics packages such as BioPerl and BioPython and BioRuby. BioPHP was developed in December 2005 by Joseba Bikandi at the...
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Biostrings::pairwiseAlignment Dynamic programming Both Both + Ends-free P. Aboyoun 2008 BioPerl dpAlign Dynamic programming Both Both + Ends-free Y. M. Chan 2003 BLASTZ...
69 KB (2,355 words) - 16:05, 21 January 2024
Sciences 2012". Archived from the original on 2013-01-12. "Suzi Lewis - BioPerl". Archived from the original on 2012-02-05. "Berkeley Drosophila Genome...
16 KB (1,134 words) - 05:39, 3 December 2023
(i.e. Perl and Java) at that time. Nevertheless, the BioMOBY system exhibits what can only be described as Semantic Web-like behaviours. The BioMOBY Object...
9 KB (1,029 words) - 22:33, 6 January 2024
Stein, L. D.; Stupka, E.; Wilkinson, M. D.; Birney, E. (2002). "The BioPerl Toolkit: Perl Modules for the Life Sciences". Genome Research. 12 (10): 1611–1618...
7 KB (399 words) - 10:22, 3 December 2023
Lincoln Stein (category Perl people)
Stein, L. D.; Stupka, E.; Wilkinson, M. D.; Birney, E. (2002). "The BioPerl Toolkit: Perl Modules for the Life Sciences". Genome Research. 12 (10): 1611–1618...
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and/or adopting GMOD components for model organism databases. Bioperl, BioJava, Biopython, BioRuby, etc. Ensembl Gene Ontology DAS Genomics Unified Schema...
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Michelle Williams, Kerr Smith, Busy Philipps 121 17 "Sex and Violence" Frank Perl Anna Fricke & Tom Kapinos April 2, 2003 (2003-04-02) 617 3.26 Joey, on spring...
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Will Liverman playing the title role. It received positive reviews. Arnold Perl and Marvin Worth attempted to create a drama film based on The Autobiography...
172 KB (18,483 words) - 02:57, 27 May 2024