bioinformatics, methods of pathway analysis might be used to identify key genes/ proteins within a previously known pathway in relation to a particular...
25 KB (2,906 words) - 16:21, 7 December 2024
Metabolic network modelling (redirect from Metabolic pathway analysis)
modelling, also known as metabolic network reconstruction or metabolic pathway analysis, allows for an in-depth insight into the molecular mechanisms of a...
48 KB (5,355 words) - 11:48, 23 May 2025
A biochemical cascade, also known as a signaling cascade or signaling pathway, is a series of chemical reactions that occur within a biological cell when...
99 KB (11,432 words) - 08:06, 8 June 2025
Metabolomic Pathway Analysis, shortened to MetPA, is a freely available, user-friendly web server to assist with the identification analysis and visualization...
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at which a given reaction in the network occurs. Simple metabolic pathway analysis can be done by hand, but most require the use of software to perform...
15 KB (1,985 words) - 22:27, 24 June 2025
Participatory impact pathways analysis (PIPA) is a project management approach in which the participants in a project (project and program are used synonymously...
8 KB (1,087 words) - 12:25, 19 July 2023
Gene set enrichment analysis (GSEA) (also called functional enrichment analysis or pathway enrichment analysis) is a method to identify classes of genes...
39 KB (4,629 words) - 12:14, 18 June 2025
PathVisio is a free open-source pathway analysis and drawing software. It allows drawing, editing, and analyzing biological pathways. Visualization of ones experimental...
7 KB (568 words) - 20:33, 21 January 2025
also provides functions and data for pathway, GO and gene set analysis in general. Gene Set Association Analysis for RNA-Seq GSAASeq are computational...
164 KB (20,394 words) - 21:36, 16 June 2025
query other biological pathway and interaction databases. Proteostasis Cysteine metabolism Pathway analysis "Biological Pathways Fact Sheet". Moore, Keith;...
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In biochemistry, a metabolic pathway is a linked series of chemical reactions occurring within a cell. The reactants, products, and intermediates of an...
26 KB (3,020 words) - 21:29, 29 May 2025
customization or informed adjustments. Ingenuity Pathway Analysis (IPA) is a metabolic pathway analysis software package that helps researchers model, analyze...
32 KB (3,430 words) - 18:38, 5 April 2025
pathway is a metabolic pathway leading to the production of nicotinamide adenine dinucleotide (NAD+). Metabolites involved in the kynurenine pathway include...
24 KB (2,408 words) - 05:39, 23 May 2025
Glycolysis (redirect from Embden-Meyerhof pathway)
Glycolysis is the metabolic pathway that converts glucose (C6H12O6) into pyruvate and, in most organisms, occurs in the liquid part of cells (the cytosol)...
82 KB (8,731 words) - 04:57, 2 June 2025
and interactions. Increasingly, methods such as network analysis, machine learning, and pathway enrichment are utilized to integrate and interpret multi-omics...
99 KB (9,938 words) - 18:55, 26 June 2025
The mevalonate pathway, also known as the isoprenoid pathway or HMG-CoA reductase pathway is an essential metabolic pathway present in eukaryotes, archaea...
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pathways are the mesolimbic pathway, the mesocortical pathway, the nigrostriatal pathway, and the tuberoinfundibular pathway. The mesolimbic pathway and...
47 KB (4,266 words) - 16:33, 10 June 2025
MetaboAnalyst (category Data analysis software)
processing Statistical analysis (one-factor, two-factor, and time-series data) Functional enrichment analysis Metabolic pathway analysis The table below summarizes...
9 KB (892 words) - 02:44, 26 July 2023
Gluconeogenesis (category Metabolic pathways)
Gluconeogenesis (GNG) is a metabolic pathway that results in the biosynthesis of glucose from certain non-carbohydrate carbon substrates. It is a ubiquitous...
33 KB (3,700 words) - 18:29, 22 June 2025
the fluxes in a pathway. The first significant study was subsequently published by Fell and Small in 1986, who used flux balance analysis together with...
45 KB (5,950 words) - 16:19, 12 May 2025
non-coenzyme action of thiamin in brain: biochemical, structural and pathway analysis". Scientific Reports. 5: 12583. Bibcode:2015NatSR...512583M. doi:10...
63 KB (6,259 words) - 01:48, 15 June 2025
Visual system (redirect from Visual pathway)
the visual pathway, also called the optic pathway, that can be divided into anterior and posterior visual pathways. The anterior visual pathway refers to...
59 KB (6,928 words) - 21:06, 22 May 2025
multiway election, and has been applied to digital compositing, metabolic pathway analysis, and the computation of maximum flows. A closely related problem, the...
24 KB (3,017 words) - 06:47, 12 May 2025
sequencing Geranylfarnesyl diphosphate synthase Functional Gen Set, see Pathway analysis FG (disambiguation) This disambiguation page lists articles associated...
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perspective. Gene 223: 95-102. Stahl, F. W. and H. M. Foss, 2010 A two-pathway analysis of meiotic crossing over and gene conversion in Saccharomyces cerevisiae...
10 KB (1,079 words) - 21:46, 26 June 2025
KEGG (redirect from KEGG PATHWAY Database)
biological pathways, diseases, drugs, and chemical substances. KEGG is utilized for bioinformatics research and education, including data analysis in genomics...
15 KB (1,751 words) - 22:52, 25 May 2025
The non-mevalonate pathway—also appearing as the mevalonate-independent pathway and the 2-C-methyl-D-erythritol 4-phosphate/1-deoxy-D-xylulose 5-phosphate...
17 KB (1,674 words) - 18:10, 8 June 2025
[citation needed] The website can be used to browse pathways and submit data to a suite of data analysis tools. The underlying data is fully downloadable...
11 KB (1,259 words) - 11:26, 4 April 2025
S2CID 9467242. Torkamani A, Topol EJ, Schork NJ (November 2008). "Pathway analysis of seven common diseases assessed by genome-wide association". Genomics...
166 KB (18,347 words) - 13:32, 22 June 2025
against infections. The alternative pathway is one of three complement pathways that opsonize and kill pathogens. The pathway is triggered when the C3b protein...
7 KB (865 words) - 03:25, 26 May 2025