Protein backbone fragment libraries have been used successfully in a variety of structural biology applications, including homology modeling, de novo...
10 KB (1,297 words) - 01:47, 10 June 2025
genetic engineering, and protein engineering, and the applications of these libraries depend on the source of the original DNA fragments. There are differences...
11 KB (1,204 words) - 21:21, 22 April 2024
The Klenow fragment is a large protein fragment produced when DNA polymerase I from E. coli is enzymatically cleaved by the protease subtilisin. First...
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A myeloma protein is an abnormal antibody (immunoglobulin) or (more often) a fragment thereof, such as an immunoglobulin light chain, that is produced...
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interaction, increasing the combinatorial advantage of a fragment library even further. Druglikeness Protein-directed dynamic combinatorial chemistry Lipinski's...
13 KB (1,444 words) - 15:06, 23 June 2025
prediction of new protein structures. Methods for protein structure prediction fall under one of the four following classes: ab initio, fragment based methods...
58 KB (7,430 words) - 23:57, 9 June 2025
Phage display (redirect from Phage display library)
study of protein–protein, protein–peptide, and protein–DNA interactions that uses bacteriophages (viruses that infect bacteria) to connect proteins with the...
38 KB (4,630 words) - 03:13, 22 June 2024
molecular mechanics modeling Modelling biological systems Protein fragment library Lattice proteins Statistical potential "Index of /downloads/psipred". bioinfadmin...
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Homology modeling (category Protein methods)
The variable regions are often constructed with the help of a protein fragment library. The segment-matching method divides the target into a series of...
40 KB (5,150 words) - 06:21, 9 June 2025
polymerase α, which impairs the editing of the Okazaki fragment sequence and incorporation of the protein into the genetic material. Both alterations can lead...
34 KB (4,470 words) - 07:49, 11 November 2024
prion protein (PrP) is encoded in the human body by the PRNP gene also known as CD230 (cluster of differentiation 230). Expression of the protein is most...
45 KB (5,160 words) - 15:37, 21 April 2025
protein structure prediction Molecular design software Molecular modeling software Modelling biological systems Fragment libraries Lattice proteins Statistical...
73 KB (9,235 words) - 18:06, 23 June 2025
interrogation of libraries via affinity selection, typically on an immobilized protein target. A homogeneous method for screening DNA-encoded libraries (DELs) has...
45 KB (5,039 words) - 20:51, 18 June 2025
Two-hybrid screening (category Protein–protein interaction assays)
protein-fragment complementation assay. Pioneered by Stanley Fields and Ok-Kyu Song in 1989, the technique was originally designed to detect protein–protein...
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act on the amyloid-beta precursor protein (APP) to cleave the protein into three fragments.[citation needed] Sequential cleavage by beta-secretase 1 (BACE)...
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many commercial meat tenderizers. Papain belongs to a family of related proteins, known as the papain-like protease family, with a wide variety of activities...
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of protein structure prediction software summarizes notable used software tools in protein structure prediction, including homology modeling, protein threading...
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Bimolecular fluorescence complementation (category Protein–protein interaction assays)
technology typically used to validate protein interactions. It is based on the association of fluorescent protein fragments that are attached to components...
46 KB (5,192 words) - 21:42, 24 June 2025
are fragmented and then recombined. DNA shuffling utilizes random recombination as opposed to site-directed mutagenesis in order to generate proteins with...
25 KB (2,913 words) - 04:36, 21 September 2023
fragments are separated by electrophoresis using an electric current to move them through a sieve-like gel or matrix, which allows smaller fragments to...
17 KB (2,313 words) - 21:59, 23 May 2025
Site-directed mutagenesis (category Protein engineering)
investigating the structure and biological activity of DNA, RNA, and protein molecules, and for protein engineering. Site-directed mutagenesis is one of the most...
25 KB (2,980 words) - 11:45, 6 February 2025
Fusion proteins or chimeric (kī-ˈmir-ik) proteins (literally, made of parts from different sources) are proteins created through the joining of two or...
19 KB (2,305 words) - 05:22, 15 May 2024
infections. These chimeric proteins are usually made of a modified antibody or antibody fragment, attached to a fragment of a toxin. The targeting portion...
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which protein binds to a particular DNA fragment. Bacterial one-hybrid system (B1H) is used to identify which protein binds to a particular DNA fragment. Structure...
22 KB (2,637 words) - 06:01, 3 April 2025
cleavage due to protein binding. The control sample, which lacks protein binding, will undergo random cleavage that creates a distinct fragment pattern observed...
45 KB (5,422 words) - 19:18, 9 June 2025
The neonatal fragment crystallizable (Fc) receptor (also FcRn, IgG receptor FcRn large subunit p51, or Brambell receptor) is a protein that in humans...
37 KB (4,079 words) - 21:38, 29 May 2025
Anaphylatoxin (category Protein families)
b-fragments. A-fragments form distinct structural domains of approximately 76 amino acids, coded for by a single exon within the complement protein gene...
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Molecular biology (section The Bradford protein assay)
PCR can also be used to determine whether a particular DNA fragment is found in a cDNA library. PCR has many variations, like reverse transcription PCR...
49 KB (5,554 words) - 06:34, 26 May 2025
Amyloid-beta precursor protein (APP) is an integral membrane protein expressed in many tissues and concentrated in the synapses of neurons. It functions...
51 KB (5,483 words) - 16:48, 10 June 2025
the observed fragment masses to match with a database of predicted masses for one of many given peptide sequences. Tandem MS of whole protein ions has been...
31 KB (3,815 words) - 12:56, 23 May 2025