bioinformatics, sequence assembly refers to aligning and merging fragments from a longer DNA sequence in order to reconstruct the original sequence. This is...

transcripts using sequence assembly. Two main categories of sequence assembly are often distinguished: de novo transcriptome assembly - especially important...

visualization. Major research efforts in the field include sequence alignment, gene finding, genome assembly, drug design, drug discovery, protein structure alignment...

reach a global optimum in the assembly, and do not perform well on read sets that contain repeat regions. Early de novo sequence assemblers, such as SEQAID...

original sequence is reconstructed from the reads using sequence assembly software. First, overlapping reads are collected into longer composite sequences known...

used DNA sequence assembly programs in the biotech industry. Phrap uses Phred quality scores to determine highly accurate consensus sequences and to estimate...

individuals. They are used in shotgun sequencing, specifically to aid sequence assembly. STSs are very helpful for detecting microdeletions in some genes...

without external direction Sequence assembly, a process to reconstruct a long DNA sequence from numerous fragments Assembly rules, set of controversial...

In bioinformatics, sequence analysis is the process of subjecting a DNA, RNA or peptide sequence to any of a wide range of analytical methods to understand...

higher. Sequence assembly refers to aligning and merging fragments of a much longer DNA sequence in order to reconstruct the original sequence. This is...

DNA sequencing is the process of determining the nucleic acid sequence – the order of nucleotides in DNA. It includes any method or technology that is...

k} contained within a biological sequence. Primarily used within the context of computational genomics and sequence analysis, in which k-mers are composed...

Repeated sequences (also known as repetitive elements, repeating units or repeats) are short or long patterns that occur in multiple copies throughout...

templates needed to sequence DNA contigs at a given redundancy. Microfluidics may allow for faster, cheaper and easier sequence assembly. Maxam–Gilbert sequencing...

hampered by the lack of a reference genome assembly. In May 2022, a fully annotated reference genome sequence of Avena sativa was reported. The AA subgenome...

LiftOver were introduced to enhance sequence alignment and coordinate conversion between different genome assemblies. Between 2004 and 2010, the UCSC Genome...

A reference genome (also known as a reference assembly) is a digital nucleic acid sequence database, assembled by scientists as a representative example...

Just in sequence (JIS) is an inventory strategy that matches just in time (JIT) and complete fit in sequence with variation of assembly line production...

of a gene based on its sequence alone. Gene prediction is one of the key steps in genome annotation, following sequence assembly, the filtering of non-coding...

reference genome, using de novo sequence assembly De novo gene birth, the emergence of genes from non-coding sequence De novo domestication, the domestication...

for DNA sequence assembly. It is part of the Phred-Phrap-Consed package. Phrap was originally developed by Prof. Phil Green for the assembly of cosmids...

hybrid genome assembly refers to utilizing various sequencing technologies to achieve the task of assembling a genome from fragmented, sequenced DNA resulting...

(Texas), two ranches SPAdes (software), a set of tools for genomic sequence assembly SMART Process Acceleration Development Environment Spade (political...

the Prüfer sequence (also Prüfer code or Prüfer numbers) of a labeled tree is a unique sequence associated with the tree. The sequence for a tree on...

Velvet: a set of algorithms manipulating de Bruijn graphs for genomic sequence assembly Geohash: a public domain algorithm that encodes a decimal latitude/longitude...

genome that is used to guide sequencing and assembly. Contigs can thus refer both to overlapping DNA sequences and to overlapping physical segments (fragments)...

software for molecular mechanics modeling Earth BioGenome Project List of sequence alignment software List of open-source healthcare software List of biomedical...

minor differences between the sequences of interest. Spaced seeds have been used in homology search., alignment, assembly, and metagenomics. They are usually...

De novo transcriptome assembly is the de novo sequence assembly method of creating a transcriptome without the aid of a reference genome. As a result...

annotated DNA and RNA sequences. It also stores complementary information such as experimental procedures, details of sequence assembly and other metadata...