Bayesian inference of phylogeny combines the information in the prior and in the data likelihood to create the so-called posterior probability of trees...
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Bayesian inference (/ˈbeɪziən/ BAY-zee-ən or /ˈbeɪʒən/ BAY-zhən) is a method of statistical inference in which Bayes' theorem is used to update the probability...
66 KB (8,785 words) - 23:55, 28 March 2024
List of things named after Thomas Bayes (redirect from Bayesian)
in multiple levels Bayesian History Matching Bayesian inference – Method of statistical inference Bayesian inference in phylogeny – Statistical method...
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are central to maximum likelihood estimation of phylogeny as well as Bayesian inference in phylogeny. Estimates of evolutionary distances (numbers of...
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Monte Carlo method (category All Wikipedia articles written in American English)
example for Bayesian inference in phylogeny, or for studying biological systems such as genomes, proteins, or membranes. The systems can be studied in the coarse-grained...
86 KB (9,826 words) - 12:29, 21 May 2024
List of statistics articles (redirect from List of topics in statistics)
inference Bayesian inference in marketing Bayesian inference in phylogeny Bayesian inference using Gibbs sampling Bayesian information criterion Bayesian linear...
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Computational phylogenetics (redirect from Mathematical phylogeny)
phylogenetics, phylogeny inference, or phylogenetic inference focuses on computational and optimization algorithms, heuristics, and approaches involved in phylogenetic...
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Connecticut known for her work on Bayesian inference in phylogeny. With Ming-Hui Chen and Paul O. Lewis, she is the author of Bayesian Phylogenetics: Methods, Algorithms...
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Kuo (born 1949), American statistician known for her work on Bayesian inference in phylogeny Bärbel-Maria Kurth (born 1954), German statistician and epidemiologist...
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Information (category Concepts in metaphysics)
J. P.; Ronquist, F.; Nielsen, R.; Bollback, J. P. (2001). "Bayesian inference of phylogeny and its impact on evolutionary biology". Science. 294 (5550):...
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most currently implementations of parsimony, likelihood, and Bayesian phylogenetic inference use time-reversible character models, and thus accord no special...
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maximum parsimony (also simply referred to as parsimony), UPGMA, Bayesian phylogenetic inference, maximum likelihood and distance matrix methods. List of phylogenetic...
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Molecular phylogenetics (redirect from Molecular phylogenies)
best-fitting substitution models), and phylogeny reconstruction using Maximum Likelihood and Bayesian Inference, is available at Nature Protocol. Another...
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Phylogenetic tree (redirect from Phylogeny)
Computational phylogenetics (also phylogeny inference) focuses on the algorithms involved in finding optimal phylogenetic tree in the phylogenetic landscape...
29 KB (3,061 words) - 16:43, 26 March 2024
Ronquist, F.; Nielsen, R.; Bollback, J. P. (2001-12-14). "Bayesian Inference of Phylogeny and Its Impact on Evolutionary Biology". Science. 294 (5550)...
42 KB (4,804 words) - 03:17, 21 May 2024
and methods of parsimony, maximum likelihood (ML), and MCMC-based Bayesian inference. All these depend upon an implicit or explicit mathematical model...
57 KB (6,605 words) - 10:50, 27 April 2024
Occam's razor (category Concepts in epistemology)
probabilistic (Bayesian) basis for Occam's razor is elaborated by David J. C. MacKay in chapter 28 of his book Information Theory, Inference, and Learning...
93 KB (10,778 words) - 04:23, 15 May 2024
Information theory (category Computer-related introductions in 1948)
J. P.; Ronquist, F.; Nielsen, R.; Bollback, J. P. (2001). "Bayesian inference of phylogeny and its impact on evolutionary biology". Science. 294 (5550):...
54 KB (7,088 words) - 17:50, 10 May 2024
Statistical proof (section In legal proceedings)
Huelsenbeck, J. P.; Ronquist, F.; Bollback, J. P. (2001). "Bayesian Inference of Phylogeny and Its Impact on Evolutionary Biology" (PDF). Science. 294...
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modeling and inference in molecular phylogenetics. Recent exciting developments in Bayesian phylogenetics are summarized in an edited book and in chapter 8...
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(Lepidosauria, Rhynchocephalia) and rhynchocephalian phylogeny based on parsimony and Bayesian inference". Journal of Paleontology. 92 (4): 734–742. doi:10...
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Ancestral reconstruction (category Wikipedia articles published in peer-reviewed literature)
of discovery, these are maximum parsimony, maximum likelihood, and Bayesian Inference. Maximum parsimony considers all evolutionary events equally likely;...
114 KB (13,011 words) - 04:23, 24 May 2024
Garzapelta (category Fossil taxa described in 2024)
paratypothoracines. Reyes and colleagues conducted both parsimony and Bayesian inference to recover the relationship between Garzapelta and other aetosaurs...
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other methods for inferring phylogenies based on discrete character data, including maximum likelihood and Bayesian inference. Each offers potential advantages...
53 KB (7,404 words) - 10:23, 15 January 2024
May-Collado, Laura; Agnarsson, Ingi (2006). "Cytochrome b and Bayesian inference of whale phylogeny" (PDF). Molecular Phylogenetics and Evolution. 38 (2): 344–54...
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Gamma distribution (section Bayesian inference)
{\frac {y}{Nk-1}}\pm {\sqrt {\frac {y^{2}}{(Nk-1)^{2}(Nk-2)}}}.} In Bayesian inference, the gamma distribution is the conjugate prior to many likelihood...
59 KB (8,713 words) - 07:26, 19 May 2024
Cross-species transmission (category Bayesian statistics)
likelihood-based analyses and can be very effective in cross-species transmission studies. Bayesian inference of character evolution methods can account for...
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Mygalomorphae (category All Wikipedia articles written in Australian English)
assessment of the phylogeny of North American euctenizine trapdoor spiders (Araneae, Mygalomorphae, Cyrtaucheniidae) using Bayesian inference". Molecular Phylogenetics...
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Echimyidae (section Phylogeny)
likelihood and Bayesian inference — leading to the identification of robust clades and the recognition of higher categorical ranks (see Phylogeny section)....
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Muller, J. and Reisz, R.R. (2006). "The phylogeny of early eureptiles: Comparing parsimony and Bayesian approaches in the investigation of a basal fossil...
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