Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating with gene expression profiles...
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DisGeNET (section Cytoscape plugin)
exploitation and analysis. DISGENET is available through a Web interface, a Cytoscape plugin, as linked data for the Semantic Web, and supports programmatic...
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MooTools Prototype JavaScript Framework AnyChart Babylon.js Chart.js Cytoscape D3.js Dojo Toolkit FusionCharts Google Charts Highcharts p5.js Plotly...
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the vertices' graph-theoretic distance, is from Kamada & Kawai (1989). Cytoscape, software for visualising biological networks. The base package includes...
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integrated". AnyChart. "Chart.js - Documentation". www.chartjs.org. "cytoscape/cytoscape.js". GitHub. Protovis is no longer under active development., retrieved...
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Daniel; Amin, Nada; Schwikowski, Benno; Ideker, Trey (November 2003). "Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction...
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1186/1471-2105-8-213. ISSN 1471-2105. PMC 1906840. PMID 17584922. "Cytoscape". Cytoscape. Cytoscape Consortium. Retrieved April 16, 2024. "ITOL Interactive Tree...
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W.; Cavalcoli, J. D.; Athey, B. D.; Omenn, G. S. (2010). "Metscape: a Cytoscape plug-in for visualizing and interpreting metabolomic data in the context...
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For Java, in the Apache Commons Graph library For JavaScript, in the Cytoscape library For Julia, in the Graphs.jl package For MATLAB, in the Matlab_bgl...
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Watts–Strogatz small-world model generated by igraph and visualized by Cytoscape 2.5. 100 nodes....
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building and analysing molecular interaction networks. esyN is based on cytoscape.js and its aim is to make it easy for everybody to perform network analysis...
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Huang CC, Babbitt PC, Ferrin TE (September 2007). "structureViz: linking Cytoscape and UCSF Chimera". Bioinformatics. 23 (17): 2345–7. doi:10.1093/bioinformatics/btm329...
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networks and complement them with other types of data. For instance, Cytoscape is an open-source software widely used and many plugins are currently...
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formats Dot language GraphML Graph Modelling Language Related software Cytoscape Graph-tool Graphviz Tulip (software) yEd AllegroGraph NetworkX NodeXL...
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are over-represented in a list of genes/proteins taken from a network. Cytoscape tool Bayesian probability Network medicine Mercatelli D, Scalambra L,...
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3" ] edge [ source 3 target 1 label "Edge from node 3 to node 1" ] ] Cytoscape, an open source bioinformatics software platform for visualizing molecular...
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kaggle.com. Retrieved 22 August 2018. Shannon, Paul; et al. (2003). "Cytoscape: a software environment for integrated models of biomolecular interaction...
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with several widely used software packages such as Bioconductor, Galaxy, Cytoscape, and Taverna. There are around 40 BioMart data sources including the Atlas...
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cost Notes Cytoscape Network analysis and visualization software .sif, .nnf, .gml, SBML, BioPAX, GraphML, Delimited text, .xls,. xlsx, Cytoscape.js JSON...
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for visualizing large networks by drawing nodes as horizontal lines. Cytoscape, open-source software for visualizing molecular interaction networks Gephi...
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heterogeneous stock Weighted correlation network analysis, also known as WGCNA Cytoscape network display Correlated trait loci mapping A genome browser to display...
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network links to AGS genes. Beyond open-source tools, such as STRING or Cytoscape, a number of companies sell licensed software products to analyse gene...
25 KB (2,906 words) - 16:21, 7 December 2024
interaction networks, which can be further analysed and visualised using Cytoscape or Medusa. MatrixDB is an active member of the International Molecular...
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Intelligence and Reporting Tools (BIRT) Project – Open source reporting engine Cytoscape – an open source bioinformatics software platform (as of version 3.0)...
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mapping of protein sets. Uses BioJava for handling most input data formats. Cytoscape: An open source bioinformatics software platform to visualize molecular...
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is linked with several tools and data sources for genomics analysis: Cytoscape, Galaxy, GenePattern, Genomica, geWorkbench, InSilico DB, the Integrative...
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expression (heatmaps, volcano plot), molecular interaction networks (through Cytoscape), protein sequence and protein structure data (e.g., MarkUs). Integration...
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experimentally derived protease cut-sites for a given protein target of interest. Cytoscape Computational genomics Metabolic network modelling Protein–protein interaction...
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sheets, PowerPoint slides, and custom analysis files (e.g., .cys file by Cytoscape, .svg by Circos) for further offline analysis or processing. One noticeable...
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information of websites. XGMML is often used for data mining on websites. Cytoscape, an open source bioinformatics software platform for visualizing molecular...
3 KB (267 words) - 08:35, 27 August 2024