gene prediction or gene finding refers to the process of identifying the regions of genomic DNA that encode genes. This includes protein-coding genes...
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of software tools and web portals used for gene prediction. Gene prediction List of RNA structure prediction software Comparison of software for molecular...
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GeneMark is a generic name for a family of ab initio gene prediction algorithms and software programs developed at the Georgia Institute of Technology...
15 KB (1,484 words) - 12:35, 13 December 2024
Metagenomics (section Gene prediction)
large regions of contiguous genomic DNA available for comparison. Gene prediction is usually done after binning. Comparative metagenomics involves analyzing...
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function prediction Protein–protein interaction prediction Gene prediction Protein structure prediction software De novo protein structure prediction Molecular...
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A prediction (Latin præ-, "before," and dictum, "something said") or forecast is a statement about a future event or about future data. Predictions are...
28 KB (4,340 words) - 19:47, 27 May 2025
Sequence analysis (section Gene prediction)
Gene prediction or gene finding refers to the process of identifying the regions of genomic DNA that encode genes. This includes protein-coding genes...
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The browser featured various aligned annotation tracks, including gene predictions, mRNA/EST alignments, and SNP markers, all presented in a scrollable...
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Gene dosage Gene redundancy Gene silencing Genetic algorithm Haplotype List of gene prediction software Lists of human genes Predictive medicine Quantitative...
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gene prediction, the number of true negatives (non-genes) in genomic sequences is generally unknown and much larger than the actual number of genes (true...
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Samuel Karlin at Stanford University. In 2001, the world of human gene prediction entered into Comparative genomics. This resulted in the development...
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list of RNA structure prediction software is a compilation of software tools and web portals used for RNA structure prediction. The single sequence methods...
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Pseudogene (redirect from Pseudo-gene)
annotated as genes in genome sequences. Processed pseudogenes often pose a problem for gene prediction programs, often being misidentified as real genes or exons...
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interaction Protein function prediction Protein structure prediction Protein structure prediction software Gene prediction Macromolecular docking Protein–DNA...
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These predictions are often driven by data-intensive computational procedures. Information may come from nucleic acid sequence homology, gene expression...
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Bioinformatics (section Gene function prediction)
alignment, gene finding, genome assembly, drug design, drug discovery, protein structure alignment, protein structure prediction, prediction of gene expression...
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of a gene rather than the complete gene. One common use of open reading frames (ORFs) is as one piece of evidence to assist in gene prediction. Long...
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assemblers List of gene prediction software List of disorder prediction software List of Protein subcellular localization prediction tools List of phylogenetics...
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Indian cobra (section Gene organization)
venom glands. Further studies on gene prediction and annotation of the Indian cobra genome identified 139 toxin genes from 33 protein families. These included...
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DNA annotation (redirect from Gene annotation)
annotation is gene prediction, which is why numerous methods have been developed for this purpose. Gene prediction is a misleading term, as most gene predictors...
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Proteogenomics (section Ab initio gene prediction)
proteomic information, often derived from mass spectrometry, to improve gene annotations. The utilization of both proteomics and genomics data alongside...
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ABCC11 (redirect from ABCC11 (gene))
ABC transporter superfamily, identified by EST database mining and gene prediction program, is highly expressed in breast cancer". Molecular Medicine...
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Hypothetical proteins are created by gene prediction software during genome analysis. When the bioinformatic tool used for the gene identification finds a large...
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Ribosome-binding site (section Gene annotation)
Eukaryotic translation Bacterial translation Archaeal translation Gene prediction Shine, J.; Dalgarno, L. (1975-03-06). "Determinant of cistron specificity...
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UniProtKB/TrEMBL. UniProtKB/TrEMBL also contains sequences from PDB, and from gene prediction, including Ensembl, RefSeq and CCDS. Since 22 July 2021 it also includes...
21 KB (1,905 words) - 09:49, 27 May 2025
Machine learning in bioinformatics (section Clustering and abundance profiling of biosynthetic gene clusters)
determine the location of protein-encoding genes within a given DNA sequence (i.e. gene prediction). Gene prediction is commonly performed through both extrinsic...
72 KB (8,279 words) - 02:49, 26 May 2025
Phylogenomics (section Prediction of gene function)
applied to prediction of gene function. Before the use of phylogenomic techniques, predicting gene function was done primarily by comparing the gene sequence...
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GLIMMER (section Resolving overlapping genes)
bases. False positive predictions were increased in GLIMMER 2.0 to reduce the number of false negative predictions. Overlapped genes are also resolved in...
21 KB (2,898 words) - 15:26, 21 November 2024
visualize and browse entire genomes with annotated data, including gene prediction, gene structure, protein, expression, regulation, variation, and comparative...
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separation in scanning solutions Machine translation Partial discharge Gene prediction Handwriting recognition Alignment of bio-sequences Time series analysis...
52 KB (6,811 words) - 21:13, 26 May 2025