Multiple sequence alignment (MSA) is the process or the result of sequence alignment of three or more biological sequences, generally protein, DNA, or...

In bioinformatics, a sequence alignment is a way of arranging the sequences of DNA, RNA, or protein to identify regions of similarity that may be a consequence...

This page is a subsection of the list of sequence alignment software. Multiple alignment visualization tools typically serve four purposes: Aid general...

of sequence alignment software is a compilation of software tools and web portals used in pairwise sequence alignment and multiple sequence alignment. See...

MUltiple Sequence Comparison by Log-Expectation (MUSCLE) is a computer software for multiple sequence alignment of protein and nucleotide sequences. It...

acid or protein sequence as input, or use statistical models generated from multiple sequence alignments of known related sequences. Statistical models...

approaches for sequence analysis were based on sequence alignment either global or local, pairwise or multiple sequence alignment. Alignment-based approaches...

Clustal is a computer program used for multiple sequence alignment in bioinformatics. It is one of the most widely cited bioinformatics software with...

MAFFT (multiple alignment using fast Fourier transform) is a program used to create multiple sequence alignments of amino acid or nucleotide sequences. Published...

which multiple unrelated amino acid sequences converge on a common tertiary structure. Structural alignments can compare two sequences or multiple sequences...

homologous to the sequences that were used to construct the profile-HMM. Profile-HMMs are constructed from a multiple sequence alignment in the HMMER package...

for Alignment Evaluation) is a multiple sequence alignment software using a progressive approach. It generates a library of pairwise alignments to guide...

techniques that provide the sequence comparisons (sequence alignment) and analyze the alignment product to understand its biology. Sequence analysis in molecular...

available for multiple sequence alignment. All of which possess their own strengths and weaknesses and may be specialized for distinct sequence types (DNA...

then obtain the local alignment. Multiple sequence alignment is an extension of pairwise alignment to align several sequences at a time. Different MSA...

the same event on the same day. Training consists of using multi-sequence alignment to generate sentence-level paraphrases from an unannotated corpus...

AMAP is a multiple sequence alignment program based on sequence annealing. This approach consists of building up the multiple alignment one match at a...

at each position in a sequence alignment. It represents the results of multiple sequence alignments in which related sequences are compared to each other...

situation improves somewhat when the amino acid variation in multiple sequence alignments is taken into account. Some parts of the protein have fixed three-dimensional...

generate multiple sequence alignments.[page needed] This method utilizes Kmer and Kimura distances to generate multiple sequence alignments.[page needed]...

sequence logo can then be created from the conserved multiple sequence alignment. The sequence logo will show how well residues are conserved at each...

Fast statistical alignment (FSA) is a multiple sequence alignment program for aligning many proteins, RNAs, or long genomic DNA sequences. Along with MUSCLE...

phylogenetic tree, including DNA/Amino Acid contiguous sequence assembly, multiple sequence alignment, model-test (testing best-fitting substitution models)...

Sequence logos provide a compact and informative visualization of conserved sequence and variability. Multiple sequence alignment: Multiple sequence alignment...

phylogenetics, tree alignment is a computational problem concerned with producing multiple sequence alignments, or alignments of three or more sequences of DNA, RNA...

unique match or MUM, for short, is part of a key step in the multiple sequence alignment of genomes in computational biology. Identification of MUMs and...

DIALIGN-TX is a multiple sequence alignment program written by Amarendran R. Subramanian and is substantial improvement of DIALIGN-T by combining greedy...

Sequence graph, also called an alignment graph, breakpoint graph, or adjacency graph, are bidirected graphs used in comparative genomics. The structure...

(or matrix) of site pattern frequencies obtained from a DNA multiple sequence alignment can be used to generate another vector that carries information...

evolution. The method uses related sequences to reconstruct an "ancestral" gene from a multiple sequence alignment. The method can be used to 'resurrect'...