The Structural Classification of Proteins (SCOP) database is a largely manual classification of protein structural domains based on similarities of their...

Structural Classification of Proteins database. A related concept is protein topology. Proteins are not static objects, but rather populate ensembles of conformational...

schemes are: CATH database Structural Classification of Proteins database (SCOP) Both classification schemes are based on a hierarchy of fold types. At the...

classification databases (SCOP and CATH). All-α proteins are a class of structural domains in which the secondary structure is composed entirely of α-helices...

Classification of Proteins (SCOP) CATH Protein Structure Classification database Sequence motif Structural motif George, R. A. (2002) "Predicting Structural Domains...

wider family. For example, in the Structural Classification of Proteins database classification system, members of a subfamily share the same interaction...

level of classification are protein superfamilies, which group distantly related proteins, often based on their structural similarity. Next are protein families...

RNABase HIC-Up database of PDB ligands Archived 2020-08-08 at the Wayback Machine Structural Classification of Proteins database CATH Protein Structure Classification...

A protein superfamily is the largest grouping (clade) of proteins for which common ancestry can be inferred (see homology). Usually this common ancestry...

The CATH Protein Structure Classification database is a free, publicly available online resource that provides information on the evolutionary relationships...

until 2010 was the Structural Classification of Proteins database (or SCOP). Over the years SCOP has supported the development of computational tools...

of protein families and domains SCOP Structural classification of Proteins CATH Class Architecture Topology Homology FSSP FSSP PASS2 PASS2 - Protein Alignments...

SUPERFAMILY is a database and search platform of structural and functional annotation for all proteins and genomes. It classifies amino acid sequences...

Data Bank Structural Classification of Proteins database STING Molecular modelling List of software for molecular mechanics modeling Protein structure...

Proteins are large biomolecules and macromolecules that comprise one or more long chains of amino acid residues. Proteins perform a vast array of functions...

past three years have similar structural folds to ones already in the PDB. The Structural Classification of Proteins database (SCOP) provides a detailed...

Families of Structurally Similar Proteins or FSSP is a database of structurally superimposed proteins generated using the "Distance-matrix ALIgnment" (DALI)...

kinds of structural features found in proteins. Descriptions of such terms may be found at the CATH Web site, the Structural Classification of Proteins (SCOP)...

with extracting structural thermodynamics since there are always numerous other structural features present in whole proteins. Also proteins are inherently...

coil structure. Hence, proteins may be classified by the structures they hold. Databases of proteins which use such a classification include SCOP and CATH...

including other tools. SCOP the Structural Classification of Proteins [2] a detailed and comprehensive description of the structural and evolutionary relationships...

construct a database known as FSSP (Fold classification based on Structure-Structure alignment of Proteins, or Families of Structurally Similar Proteins) in which...

IMPs are transmembrane proteins. IMPs comprise a significant fraction of the proteins encoded in an organism's genome. Proteins that cross the membrane...

classifying proteins by their dominant fold, the Structural Classification of Proteins database maintains a large category specifically for all-α proteins. Hemoglobin...

disease and non-disease associated proteins Rfam: a database of RNA families IRESbase: A comprehensive database of experimentally validated internal ribosome...

system for membrane transport proteins, including ion channels. The upper level of classification and a few examples of proteins with known 3D structure: 1...

multi-domain proteins. They are sometimes considered as a separate class of proteins along with globular, fibrous and membrane proteins. IDPs are a very...

repository for protein sequence and structural information UniProt: provides sequence and functional information Structural Classification of Proteins (SCOP Classifications):...

cellular Activities) proteins (speak: triple-A ATPases) are a large group of protein family sharing a common conserved module of approximately 230 amino...

fibrous proteins or scleroproteins are one of the three main classifications of protein structure (alongside globular and membrane proteins). Fibrous...