bioinformatics, sequence assembly refers to aligning and merging fragments from a longer DNA sequence in order to reconstruct the original sequence. This is...

individuals. They are used in shotgun sequencing, specifically to aid sequence assembly. STSs are very helpful for detecting microdeletions in some genes...

visualization. Major research efforts in the field include sequence alignment, gene finding, genome assembly, drug design, drug discovery, protein structure alignment...

original sequence is reconstructed from the reads using sequence assembly software. First, overlapping reads are collected into longer composite sequences known...

In bioinformatics, sequence analysis is the process of subjecting a DNA, RNA or peptide sequence to any of a wide range of analytical methods to understand...

used DNA sequence assembly programs in the biotech industry. Phrap uses Phred quality scores to determine highly accurate consensus sequences and to estimate...

DNA sequencing is the process of determining the nucleic acid sequence – the order of nucleotides in DNA. It includes any method or technology that is...

without external direction Sequence assembly, a process to reconstruct a long DNA sequence from numerous fragments Assembly rules, set of controversial...

k} contained within a biological sequence. Primarily used within the context of computational genomics and sequence analysis, in which k-mers are composed...

higher. Sequence assembly refers to aligning and merging fragments of a much longer DNA sequence in order to reconstruct the original sequence. This is...

Repeated sequences (also known as repetitive elements, repeating units or repeats) are short or long patterns that occur in multiple copies throughout...

transcripts using sequence assembly. Two main categories of sequence assembly are often distinguished: de novo transcriptome assembly - especially important...

templates needed to sequence DNA contigs at a given redundancy. Microfluidics may allow for faster, cheaper and easier sequence assembly. Maxam–Gilbert sequencing...

reach a global optimum in the assembly, and do not perform well on read sets that contain repeat regions. Early de novo sequence assemblers, such as SEQAID...

hampered by the lack of a reference genome assembly. In May 2022, a fully annotated reference genome sequence of Avena sativa was reported. The AA subgenome...

of a gene based on its sequence alone. Gene prediction is one of the key steps in genome annotation, following sequence assembly, the filtering of non-coding...

LiftOver were introduced to enhance sequence alignment and coordinate conversion between different genome assemblies. Between 2004 and 2010, the UCSC Genome...

Just in sequence (JIS) is an inventory strategy that matches just in time (JIT) and complete fit in sequence with variation of assembly line production...

the Prüfer sequence (also Prüfer code or Prüfer numbers) of a labeled tree is a unique sequence associated with the tree. The sequence for a tree on...

reference genome, using de novo sequence assembly De novo gene birth, the emergence of genes from non-coding sequence De novo domestication, the domestication...

Automatic release of sequence assemblies larger than 1 kb (preferably within 24 hours). Immediate publication of finished annotated sequences. Aim to make the...

A reference genome (also known as a reference assembly) is a digital nucleic acid sequence database, assembled by scientists as a representative example...

De novo transcriptome assembly is the de novo sequence assembly method of creating a transcriptome without the aid of a reference genome. As a result...

assembly. Judicious commenting is essential in assembly language programs, as the meaning and purpose of a sequence of binary machine instructions can be difficult...

genome that is used to guide sequencing and assembly. Contigs can thus refer both to overlapping DNA sequences and to overlapping physical segments (fragments)...

(Texas), two ranches SPAdes (software), a set of tools for genomic sequence assembly SMART Process Acceleration Development Environment Spade (political...

According to Henry Ford: The principles of assembly are these: (1) Place the tools and the men in the sequence of the operation so that each component part...

for DNA sequence assembly. It is part of the Phred-Phrap-Consed package. Phrap was originally developed by Prof. Phil Green for the assembly of cosmids...

the United States Velvet assembler, a set of algorithms for genomic sequence assembly Velvet Divorce, the dissolution of Czechoslovakia in 1993 Velvet Revolution...

sequence assembly of short fragments of sequenced DNA. One way to find the source of a fragment is to search for it against a reference DNA sequence....