• bioinformatics, sequence assembly refers to aligning and merging fragments from a longer DNA sequence in order to reconstruct the original sequence. This is...
    25 KB (2,944 words) - 13:36, 24 June 2025
  • individuals. They are used in shotgun sequencing, specifically to aid sequence assembly. STSs are very helpful for detecting microdeletions in some genes...
    2 KB (169 words) - 18:35, 16 July 2025
  • Thumbnail for Bioinformatics
    visualization. Major research efforts in the field include sequence alignment, gene finding, genome assembly, drug design, drug discovery, protein structure alignment...
    133 KB (8,439 words) - 03:30, 4 July 2025
  • Thumbnail for Shotgun sequencing
    original sequence is reconstructed from the reads using sequence assembly software. First, overlapping reads are collected into longer composite sequences known...
    23 KB (2,847 words) - 10:31, 23 July 2025
  • In bioinformatics, sequence analysis is the process of subjecting a DNA, RNA or peptide sequence to any of a wide range of analytical methods to understand...
    33 KB (3,862 words) - 18:08, 23 July 2025
  • Thumbnail for Phred quality score
    used DNA sequence assembly programs in the biotech industry. Phrap uses Phred quality scores to determine highly accurate consensus sequences and to estimate...
    13 KB (1,452 words) - 14:28, 22 July 2025
  • Thumbnail for DNA sequencing
    DNA sequencing is the process of determining the nucleic acid sequence – the order of nucleotides in DNA. It includes any method or technology that is...
    136 KB (15,458 words) - 13:55, 19 July 2025
  • without external direction Sequence assembly, a process to reconstruct a long DNA sequence from numerous fragments Assembly rules, set of controversial...
    4 KB (470 words) - 07:47, 18 September 2024
  • Thumbnail for K-mer
    k} contained within a biological sequence. Primarily used within the context of computational genomics and sequence analysis, in which k-mers are composed...
    50 KB (6,070 words) - 03:24, 5 May 2025
  • Thumbnail for Genomics
    Genomics (section Assembly)
    higher. Sequence assembly refers to aligning and merging fragments of a much longer DNA sequence in order to reconstruct the original sequence. This is...
    79 KB (7,644 words) - 22:35, 17 July 2025
  • Repeated sequences (also known as repetitive elements, repeating units or repeats) are short or long patterns that occur in multiple copies throughout...
    32 KB (3,832 words) - 20:58, 13 April 2025
  • transcripts using sequence assembly. Two main categories of sequence assembly are often distinguished: de novo transcriptome assembly - especially important...
    16 KB (1,562 words) - 06:55, 19 July 2025
  • Thumbnail for Sanger sequencing
    templates needed to sequence DNA contigs at a given redundancy. Microfluidics may allow for faster, cheaper and easier sequence assembly. Maxam–Gilbert sequencing...
    28 KB (3,350 words) - 19:28, 12 May 2025
  • reach a global optimum in the assembly, and do not perform well on read sets that contain repeat regions. Early de novo sequence assemblers, such as SEQAID...
    21 KB (2,192 words) - 03:54, 15 July 2025
  • Thumbnail for Oat
    hampered by the lack of a reference genome assembly. In May 2022, a fully annotated reference genome sequence of Avena sativa was reported. The AA subgenome...
    48 KB (5,145 words) - 16:02, 26 July 2025
  • of a gene based on its sequence alone. Gene prediction is one of the key steps in genome annotation, following sequence assembly, the filtering of non-coding...
    30 KB (3,555 words) - 03:37, 15 May 2025
  • LiftOver were introduced to enhance sequence alignment and coordinate conversion between different genome assemblies. Between 2004 and 2010, the UCSC Genome...
    45 KB (3,800 words) - 12:30, 9 July 2025
  • Just in sequence (JIS) is an inventory strategy that matches just in time (JIT) and complete fit in sequence with variation of assembly line production...
    7 KB (838 words) - 20:24, 2 May 2023
  • the Prüfer sequence (also Prüfer code or Prüfer numbers) of a labeled tree is a unique sequence associated with the tree. The sequence for a tree on...
    7 KB (983 words) - 19:02, 19 April 2025
  • reference genome, using de novo sequence assembly De novo gene birth, the emergence of genes from non-coding sequence De novo domestication, the domestication...
    2 KB (253 words) - 20:05, 4 February 2025
  • Automatic release of sequence assemblies larger than 1 kb (preferably within 24 hours). Immediate publication of finished annotated sequences. Aim to make the...
    2 KB (275 words) - 19:45, 10 December 2023
  • Thumbnail for Reference genome
    A reference genome (also known as a reference assembly) is a digital nucleic acid sequence database, assembled by scientists as a representative example...
    40 KB (3,505 words) - 16:37, 19 July 2025
  • De novo transcriptome assembly is the de novo sequence assembly method of creating a transcriptome without the aid of a reference genome. As a result...
    18 KB (2,229 words) - 03:09, 26 June 2025
  • Thumbnail for Assembly language
    assembly. Judicious commenting is essential in assembly language programs, as the meaning and purpose of a sequence of binary machine instructions can be difficult...
    89 KB (9,898 words) - 15:05, 16 July 2025
  • Thumbnail for Contig
    genome that is used to guide sequencing and assembly. Contigs can thus refer both to overlapping DNA sequences and to overlapping physical segments (fragments)...
    10 KB (1,246 words) - 12:45, 26 March 2025
  • (Texas), two ranches SPAdes (software), a set of tools for genomic sequence assembly SMART Process Acceleration Development Environment Spade (political...
    2 KB (349 words) - 02:35, 20 July 2024
  • Thumbnail for Assembly line
    According to Henry Ford: The principles of assembly are these: (1) Place the tools and the men in the sequence of the operation so that each component part...
    34 KB (4,066 words) - 13:17, 28 May 2025
  • for DNA sequence assembly. It is part of the Phred-Phrap-Consed package. Phrap was originally developed by Prof. Phil Green for the assembly of cosmids...
    6 KB (878 words) - 17:15, 13 August 2022
  • the United States Velvet assembler, a set of algorithms for genomic sequence assembly Velvet Divorce, the dissolution of Czechoslovakia in 1993 Velvet Revolution...
    4 KB (512 words) - 06:56, 17 April 2025
  • sequence assembly of short fragments of sequenced DNA. One way to find the source of a fragment is to search for it against a reference DNA sequence....
    8 KB (875 words) - 15:30, 5 March 2025