operons and regulons. A total of 120 sRNAs with 231 total interactions which all together regulate 192 genes are also included. RegulonDB was founded...
6 KB (778 words) - 17:35, 15 February 2023
Public [5] RegTransBase Prokaryotes Expert/literature curation Public [6] RegulonDB Escherichia coli Expert curation Public [7] Archived 2017-05-07 at the...
21 KB (2,176 words) - 21:02, 17 August 2024
that is, they can respond to two different sigma factors, as reported in RegulonDB. The most common ones are those promoters that can respond to both sigma...
20 KB (2,045 words) - 13:47, 26 May 2025
predictable from the topology and logic of the gene network that is reported in RegulonDB. Specifically, on average, the response strength of a gene was predictable...
48 KB (6,087 words) - 21:00, 22 May 2025
RegTransBase - transcription factor binding sites in a diverse set of bacteria. RegulonDB – Primary database on transcriptional regulation in Escherichia coli TRRD...
8 KB (795 words) - 23:03, 17 August 2024
Center for Genomic Sciences (UNAM, Mexico), where he collaborates with the RegulonDB group. He is the initiator and team leader of the OntoGene research group...
9 KB (954 words) - 14:28, 8 March 2024
particular, creating a model of the regulatory network of E. coli K-12. The RegulonDB database (released in 2010) makes this data available. He has also been...
6 KB (466 words) - 23:17, 17 February 2025
and used those position weight matrices (PSWM) provided by RegulonDB (http://regulondb.ccg.unam.mx). We built PSWM for each transcription factor from...
120 KB (2,874 words) - 03:24, 11 March 2025
and used those position weight matrices (PSWM) provided by RegulonDB (http://regulondb.ccg.unam.mx). We built PSWM for each transcription factor from...
26 KB (1,756 words) - 03:24, 11 March 2025
and used those position weight matrices (PSWM) provided by RegulonDB (http://regulondb.ccg.unam.mx). We built PSWM for each transcription factor from...
57 KB (2,278 words) - 08:00, 20 March 2025
and used those position weight matrices (PSWM) provided by RegulonDB (http://regulondb.ccg.unam.mx). We built PSWM for each transcription factor from...
70 KB (2,018 words) - 03:24, 11 March 2025
issue): D98 – D105. doi:10.1093/nar/gkq1110. PMC 3013702. PMID 21051347. "regulondb.ccg.unam.mx". Retrieved 14 May 2012. Bailey TL, Elkan C (1994). "Fitting...
54 KB (2,270 words) - 07:59, 20 March 2025
and used those position weight matrices (PSWM) provided by RegulonDB (http://regulondb.ccg.unam.mx). We built PSWM for each transcription factor from...
159 KB (2,402 words) - 04:39, 27 February 2025
and scarlet fever. Functional studies suggest that the ropB multigene regulon is responsible for not only global regulation of virulence but also a wide...
18 KB (2,121 words) - 19:49, 17 October 2024
2017). "P-Body Purification Reveals the Condensation of Repressed mRNA Regulons". Molecular Cell. 68 (1): 144–157.e5. doi:10.1016/j.molcel.2017.09.003...
184 KB (12,563 words) - 05:08, 10 March 2025
1126/science.1075090. PMID 12399584. S2CID 4841222. Odom DT, Zizlsperger N, Gordon DB, et al. (February 2004). "Control of pancreas and liver gene expression by...
87 KB (10,370 words) - 08:43, 15 May 2025
"Staphylococcus aureus competence genes: mapping of the SigH, ComK1 and ComK2 regulons by transcriptome sequencing". Molecular Microbiology. 94 (3): 557–579....
127 KB (13,914 words) - 21:41, 27 May 2025
Mercilon, Mircette, Mirvala, Novynette, Ortho-Cept, Pimtrea, Reclipsen, Regulon, Simliya, Solia, Velivet, Viorele, and Volnea among others. Desogestrel...
63 KB (5,562 words) - 20:34, 29 May 2025
be to compensate for the inactivation of the CorA protein by the PhoPQ regulon. The authors suggest that the CorA protein is inactivated to allow the...
93 KB (12,027 words) - 02:49, 23 December 2024
related oral streptococci, is subjected to acid stress, the competence regulon is induced, leading to resistance to being killed by acid. As pointed out...
121 KB (14,150 words) - 08:10, 25 May 2025
models), STRING (protein interaction networks for Systems Biology), SwissRegulon (genome-wide transcription regulatory networks), Eukaryotic Promoter Database...
11 KB (1,135 words) - 03:11, 15 December 2023
The yop genes, yadA, ylpA, and the virC operon are considered the "Yop regulon" since they are coregulated by pYV-encoded VirF. virF is in turn thermoregulated...
31 KB (3,565 words) - 15:36, 30 April 2025
J (November 2002). "The gene yjfQ encodes the repressor of the yjfR-X regulon (ula), which is involved in L-ascorbate metabolism in Escherichia coli"...
5 KB (639 words) - 10:28, 23 May 2025
Ruiz-Gutierrez M, Borden KL (2006-11-06). "eIF4E is a central node of an RNA regulon that governs cellular proliferation". The Journal of Cell Biology. 175...
65 KB (7,496 words) - 05:28, 28 May 2025