The Protein Data Bank (PDB) is a database for the three-dimensional structural data of large biological molecules such as proteins and nucleic acids, which...

Protein Data Bank (PDB) file format is a textual file format describing the three-dimensional structures of molecules held in the Protein Data Bank,...

Protein Data Bank (wwPDB) is an organization that maintains the archive of macromolecular structure. Its mission is to maintain a single Protein Data...

period. Data repository List of databases Star Wars Databank Protein Data Bank National Trauma Data Bank Memory bank International Tree-Ring Data Bank Hazardous...

atomic numbers) and cartesian coordinates. The Protein Data Bank Format is commonly used for proteins but is also used for other types of molecules. There...

representing macromolecular structure data, developed by the International Union of Crystallography (IUCr) and the Protein Data Bank It is an extension of the Crystallographic...

contact determination. The Protein Data Bank (PDB) is a database of 3D structure data for large biological molecules, such as proteins, DNA, and RNA. PDB is...

of a protein. The Protein Data Bank (PDB) was established in 1971 as the central archive of all experimentally determined protein structure data. Today...

Data on heme protein structure and function has been aggregated into The Heme Protein Database (HPD), a secondary database to the Protein Data Bank....

explore biological macromolecule structures, such as those found in the Protein Data Bank (PDB). It was originally developed by Roger Sayle in the early 1990s...

weight of R-PE is 250,000 daltons. Crystal structures available in the Protein Data Bank contain in one (αβ)2 or (αβγ)2 asymmetric unit of different phycoerythrins:...

of April 2024[update], the Protein Data Bank contains 181,018 X-ray, 19,809 EM and 12,697 NMR protein structures. Proteins are primarily classified by...

curated list of selected transmembrane proteins from the Protein Data Bank MemProtMD - a database of membrane protein structures simulated by coarse-grained...

experimentally measured binding affinity data (Kd, Ki, and IC50) for the protein-ligand complexes deposited in the Protein Data Bank (PDB). It thus provides a link...

Protein Data Bank (PDB) file, interacting with Jmol and many more. This application programming interface (API) provides various file parsers, data models...

addition, structures of many water-soluble protein domains of IMPs are available in the Protein Data Bank. Their membrane-anchoring α-helices have been...

knowing the protein's primary structure and comparing the possible predicted tertiary structure with known tertiary structures in protein data banks. This only...

Bradley AR, Christie CH, et al. (January 2017). "The RCSB protein data bank: integrative view of protein, gene and 3D structural information". Nucleic Acids...

proteins predicted to have novel folds. So far, structures have been determined for 708 of the proteins encoded by M. tuberculosis. Protein Data Bank...

L-hydroxyproline (C5H9O3N), is an amino acid, abbreviated as Hyp or O, e.g., in Protein Data Bank. In 1902, Hermann Emil Fischer isolated hydroxyproline from hydrolyzed...

activator. Three-dimensional protein structures of the peroxidated catalase intermediates are available at the Protein Data Bank. Hydrogen peroxide is a harmful...

Month in the Protein Data Bank Photosystem II: Molecule of the Month in the Protein Data Bank Photosystem II: ANU UMich Orientation of Proteins in Membranes...

difference between large numbers. Around 90% of the protein structures available in the Protein Data Bank have been determined by X-ray crystallography. This...

David Goodsell (April 2010) Concanavalin A and Circular Permutation Protein Data Bank (PDB) Molecule of the Month Overview of all the structural information...

intended as an successor to the Protein Data Bank (PDB) format. It is now the default format used by the Protein Data Bank. Also closely related is Crystallographic...

genomes and nearly 90% of sequenced archaea. Cas9 (or "CRISPR-associated protein 9") is an enzyme that uses CRISPR sequences as a guide to recognize and...

These proteins are usually ones that are poorly studied or predicted based on genomic sequence data. These predictions are often driven by data-intensive...

Committee. "#CAA39671". NCBI Entrez Protein. "Human C-reactive protein complexed with phosphocholine". Protein Data Bank in Europe. Enocsson H, Karlsson J...

used to visualize molecules, especially proteins although it can also represent other types of 3-dimensional data (such as geometric figures, social networks...

prediction as it (protein threading) is used for proteins which do not have their homologous protein structures deposited in the Protein Data Bank (PDB), whereas...