Biopython is an open-source collection of non-commercial Python tools for computational biology and bioinformatics. It contains classes to represent biological...
17 KB (1,811 words) - 13:54, 27 April 2025
of Python in scientific computing, with specialized libraries such as Biopython and Astropy providing domain-specific functionality. SageMath is a computer...
175 KB (14,436 words) - 00:46, 19 May 2025
Foundation was started in 2001, arising from the BioJava, BioPerl and BioPython projects. A formal membership for the foundation was created in 2005....
4 KB (349 words) - 21:56, 30 January 2021
net/publication/6490579_Bioclipse_An_open_source_workbench_for_chemo-_and_bioinformatics Biopython License Goto, Naohisa; Prins, Pjotr; Nakao, Mitsuteru; Bonnal, Raoul;...
13 KB (158 words) - 13:06, 10 March 2025
implementation of similar bioinformatics packages such as BioPerl and BioPython. The initial release of version 0.1 was frequently updated by contributors...
6 KB (506 words) - 13:30, 10 March 2025
biotechnology articles Earth BioGenome Project BioPerl, BioJava, BioJS, Biopython, BioRuby - libraries and modules that facilitate the development of bioinformatics...
4 KB (294 words) - 06:43, 8 May 2025
2015-03-29 at the Wayback Machine VCFtools DnaSP Popoolation2 BioPerl BioPython Peter Beerli, Estimation of migration rates and population sizes in geographically...
24 KB (1,954 words) - 09:49, 30 March 2025
Examples of such projects that fall under Bio* apart from BioJava are BioPython, BioPerl, BioRuby, EMBOSS etc. In October 2012, the first paper on BioJava...
33 KB (4,099 words) - 10:35, 19 March 2025
Open-source bioinformatics software includes Bioconductor, BioPerl, Biopython, BioJava, BioJS, BioRuby, Bioclipse, EMBOSS, .NET Bio, Orange with its...
133 KB (8,452 words) - 20:35, 15 April 2025
Kauff, Frank; Wilczynski, Bartek; de Hoon, Michiel J. L. (2009-06-01). "Biopython: freely available Python tools for computational molecular biology and...
24 KB (1,650 words) - 05:56, 23 February 2025
languages exist as part of the Open Bioinformatics Foundation, including: Biopython BioJava BioRuby BioPHP BioJS Bioconductor Earth BioGenome Project Stajich...
12 KB (1,195 words) - 13:31, 10 March 2025
China. AlphaFold - deep learning protein folding BioPerl, BioJava, BioJS, Biopython, BioRuby - libraries and modules that facilitate the development of bioinformatics...
8 KB (759 words) - 06:25, 15 March 2025
file extension for a FASTQ file, but .fq and .fastq are commonly used. Biopython version 1.51 onwards (interconverts Sanger, Solexa and Illumina 1.3+)...
31 KB (3,685 words) - 13:54, 1 May 2025
Rostlab TGAC Free and open-source software portal Biology portal BioJava, Biopython, BioRuby, BioPHP, BioPerl, Bioconductor Open Bioinformatics Foundation...
8 KB (718 words) - 00:14, 5 March 2024
Astropy Python BSD-3 Beautiful Soup Python MIT for version 4 and later Biopython Python BSD Chainer Python Apache 2.0 CatBoost Python Apache 2.0 CheetahTemplate...
31 KB (125 words) - 18:17, 12 May 2025
programming packages which provide this conversion functionality, such as BioPython, BioRuby and BioPerl. The SAM/BAM files use the CIGAR (Compact Idiosyncratic...
56 KB (6,913 words) - 01:06, 29 April 2025
Python Astropy, a library of Python tools for astronomy and astrophysics. Biopython, a Python molecular biology suite Gensim, a library for natural language...
32 KB (3,541 words) - 01:54, 19 April 2025
adopting GMOD components for model organism databases. Bioperl, BioJava, Biopython, BioRuby, etc. Ensembl Gene Ontology DAS Genomics Unified Schema Manatee:...
15 KB (956 words) - 15:22, 9 July 2024
implementation of similar bioinformatics packages such as BioPerl and BioPython and BioRuby. BioPHP was developed in December 2005 by Joseba Bikandi at...
3 KB (295 words) - 17:25, 6 January 2024