ChIP-sequencing, also known as ChIP-seq, is a method used to analyze protein interactions with DNA. ChIP-seq combines chromatin immunoprecipitation (ChIP)...

be more efficient than ChIP-chip, ChIP-seq is not always the first choice for scientists. The cost and accessibility of ChIP-seq is a major disadvantage...

assay. MOWChIP-seq is a special type of ChIP-seq assay designed for low-input and high-throughput assays. The overall process of MOWChIP-seq is similar...

gene expression (ChIP-SAGE), PET: paired end ditag sequencing (ChIP-PET) and more recently, next-generation sequencing (ChIP-Seq). ChIP-seq follows the same...

alternative to the current standard of ChIP-seq. ChIP-Seq suffers from limitations due to the cross linking step in ChIP-Seq protocols that can promote epitope...

nucleotide resolution. ATAC-seq requires no sonication or phenol-chloroform extraction like FAIRE-seq; no antibodies like ChIP-seq; and no sensitive enzymatic...

within any genome, which is a much higher resolution than either ChIP-chip or ChIP-seq. ChIP-exo has been shown to give up to single base pair resolution...

measure DNA methylation, whole-genome ChIP-sequencing to measure histone modifications, whole-genome ATAC-seq to measure chromatin accessibility and...

at a genome-wide scale in humans. A year later, the terms “MNase-Seq” and “MNase-ChIP”, for micrococcal nuclease digestion with chromatin immunoprecipitation...

Endogenous retroviruses (ERVs) are endogenous viral elements in the genome that closely resemble and can be derived from retroviruses. They are abundant...

based methods, to extend the capabilities of both approaches. ChIP-Sequencing (ChIP-Seq) is a popular method used to identify TFBS while 3C has been used...

ChIP-on-chip (also known as ChIP-chip) is a technology that combines chromatin immunoprecipitation ('ChIP') with DNA microarray ("chip"). Like regular...

As EPIC-seq studies epigenetic markers to infer gene expression, one can study epigenetic sequencing methods like ChIP-seq, ATAC-seq, MeDIP-seq, and Bisulfite-Free...

enriched with aligned reads as a consequence of performing a ChIP-sequencing or MeDIP-seq experiment. These areas are those where a protein interacts with...

interaction without antibodies. CUT&RUN: Uses protein A-Mnase ChIP-on-chip ChIP-Seq CUT&RUN ChIL-Seq "CUT&Tag: a higher resolution, lower cost way to map chromatin"...

integrated package that for analysis of ChIP-Seq and RNA-Seq datasets using a web-based user-friendly GUI. For RNA-Seq Biowardrobe performs mapping, quality...

condensation. In chromatin-immunoprecipitation coupled with DNA sequencing (ChIP-Seq), HU does not reveal any specific binding events. Instead, it displays...

analysis. ChIL-Seq is an alternative to the current standard of ChIP-seq. ChIP-Seq suffers from limitations due to the cross linking step in ChIP-Seq protocols...

occur. [citation needed] ChIA-PET combines Hi-C with ChIP-seq to detect all interactions mediated by a protein of interest. HiChIP was designed to allow...

applied in peak calling step (i.e., in recognition of signal) in ChIP-chip and ChIP-seq data analysis. In Bayesian statistics, the gamma distribution is...

is located near a binding site. DamID is an alternate method to ChIP-on-chip or ChIP-seq. N6-methyladenine (m6A) is the product of the addition of a methyl...

G, Ji H (May 2011). "hmChIP: a database and web server for exploring publicly available human and mouse ChIP-seq and ChIP-chip data". Bioinformatics....

detected in 2010 through the use of genome-wide techniques such as RNA-seq and ChIP-seq. eRNAs can be subdivided into two main classes: 1D eRNAs and 2D eRNAs...

therefore is suitable for motif search on large data sets derived from ChIP-seq (Chromatin immunoprecipitation followed by sequencing) experiments. In...

Database (MPromDb) is a curated database of gene promoters identified from ChIP-seq. The proximal promoter region (upstream of the core-promoter region) contains...

molecule to induce beiging. Chromatin immunoprecipitation with sequencing (ChIP-seq) is a method used to identify protein binding sites on DNA and assess histone...

finding interactions between DNA and regulatory proteins by the technique ChIP-Seq, or gaps where the DNA is not packaged by histones (DNase hypersensitive...

variety of proteins. The primary assays used in ENCODE are ChIP-seq, DNase I Hypersensitivity, RNA-seq, and assays of DNA methylation. In September 2012, the...

Macintosh brand MACS (software), Model-based Analysis of ChIP-Seq, software for finding peaks in ChIP-Seq data used in computational biology Magellanic Catalogue...

transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis". Nucleic Acids Research. 46 (D1): 252–D259. doi:10.1093/nar/gkx1106...