Distance matrices are used in phylogeny as non-parametric distance methods and were originally applied to phenetic data using a matrix of pairwise distances...

individual observations all plotted at zero height). Cladogram Distance matrices in phylogeny Hierarchical clustering MEGA, a freeware for drawing dendrograms...

tree reconstruction is based on additive and ultrametric distance matrices. These matrices have a special characteristic: Consider an additive matrix...

due to a similar need to deal with large amounts of data. Distance matrices in phylogeny Folk taxonomy Form classification Linnaean taxonomy Phenomics...

inference – Statistical method for molecular phylogenetics Distance matrices in phylogeny – Matrices used in construction of phylogenetic trees Neighbor joining –...

phylogenetics, phylogeny inference, or phylogenetic inference focuses on computational and optimization algorithms, heuristics, and approaches involved in phylogenetic...

of perfect phylogeny. In general there are two different data types that are used in the construction of a phylogenetic tree. In distance-based computations...

molecular sequences, gene frequencies, restriction sites and fragments, distance matrices, and discrete characters. Each program is controlled through a menu...

Least squares inference in phylogeny generates a phylogenetic tree based on an observed matrix of pairwise genetic distances and optionally a weight matrix...

topology anyway. The correctness of neighbor joining for nearly additive distance matrices implies that it is statistically consistent under many models of evolution;...

Such tools are commonly used in comparative genomics, cladistics, and bioinformatics. Methods for estimating phylogenies include neighbor-joining, maximum...

refers to the evolutionary distance; greater numbers correspond to greater distances. Matrices using greater evolutionary distances are extrapolated from those...

reconstructing phylogenetic trees from a distance matrix containing missing values, i.e. incomplete matrices, are available: Triangles method by Guénoche...

maximum likelihood estimation of phylogeny as well as Bayesian inference in phylogeny. Estimates of evolutionary distances (numbers of substitutions that...

data matrices become larger, branch support values often continue to increase as bootstrap values plateau at 100%. Thus, for large data matrices, branch...

BLOSUM-62 matrix is one of the best substitution matrices for detecting weak protein similarities. BLOSUM matrices with high numbers are designed for comparing...

substitution matrices that reflect the probabilities of given character-to-character substitutions. A series of matrices called PAM matrices (Point Accepted...

Analysis (MSSA), Distance Fit (DFIT) and Quartet Fit (QFIT), implemented in the software CLANN. Supertrees have been applied to produce phylogenies of many groups...

nucleotide composition of each position in the putative motif. The alignment can then be refined using these matrices. In standard profile analysis, the matrix...

parsimonious models based on the eigenvalue decomposition of the covariance matrices, that provide a balance between overfitting and fidelity to the data. One...

In geometry, the geometric median of a discrete set of sample points in a Euclidean space is the point minimizing the sum of distances to the sample points...

covariance matrices Estimation of signal parameters via rotational invariance techniques Estimator Etemadi's inequality Ethical problems using children in clinical...

Zibrowius, H. (1999). "Biochemical markers of zooxanthellae symbiosis in soluble matrices of skeleton of 24 Scleractinia species". Comparative Biochemistry...

descriptions of rate matrices on this page accurately reflect the relative magnitude of different substitutions, but these rate matrices are not scaled such...

shape viral phylogenies. Since the coining of the term in 2004, research on viral phylodynamics has focused on transmission dynamics in an effort to...

provides a much wider range of scoring matrices, making it easier to tailor a search to a specific evolutionary distance. An extremely fast but considerably...

Acceptable conservative substitutions may be identified using substitution matrices such as PAM and BLOSUM. Highly scoring alignments are assumed to be from...

Hetherington, Jack H. (1984). "Observations on the statistical iteration of matrices". Phys. Rev. A. 30 (2713): 2713–2719. Bibcode:1984PhRvA..30.2713H. doi:10...

(23 April 2013). "Characterization and Localization of Insoluble Organic Matrices Associated with Diatom Cell Walls: Insight into Their Roles during Cell...

matrix where each class of words was treated as a separate character. The matrices were analysed by PAUP. It was found that using the binary matrix produced...