FASTQ format is a text-based format for storing both a biological sequence (usually nucleotide sequence) and its corresponding quality scores. Both the...

Rice PM (April 2010). "The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants". Nucleic Acids Research...

FASTA format, used to represent genome sequences The FASTQ format, used to represent DNA sequencer reads along with quality scores The GVF format (Genome...

sequence file), .pup and .pileup are used. Variant Call Format FASTQ format List of file formats for molecular biology Li H.; Handsaker B.; Wysoker A.;...

header. Any other format fields are defined in the .vcf header. The FASTA format, used to represent genome sequences. The FASTQ format, used to represent...

assigned to each nucleotide base call in automated sequencer traces. The FASTQ format encodes phred scores as ASCII characters alongside the read sequences...

many formats were created, such as FASTQ, GFF or BED. However, no official specifications were published at the time, which affected some formats such...

converted with DNA Baser SFF Workbench (graphic tool), or converted to FASTQ format with sff2fastq or seq_crumbs. NCBI reference for SFF format v t e...

The FASTA format, for sequence data. Sometimes also given as FNA or FAA (Fasta Nucleic Acid or Fasta Amino Acid). FASTQ – The FASTQ format, for sequence...

here. FASTQ format SAM format SAMtools CRAM format List of file formats for molecular biology Compression of Genomic Sequencing Data SAM format specification...

Institute) and is developed in Java. Import of data is possible from FastQ files, BAM or SAM format. This tool provides an overview to inform about problematic...

alphabetical list of filename extensions contains extensions of notable file formats used by multiple notable applications or services. Contents !$@ 0-9 A B...

approximately 1.8 gigabytes of disk space per sample when stored in a compressed fastq format. Processed count data for each gene would be much smaller, equivalent...

This is a list of file formats used by archivers and compressors used to create archive files. ^1 While the original tar format uses the ASCII character...

information. The data generated from the DNA nanoballs is formatted as standard FASTQ formatted files with contiguous bases (no gaps). These files can be...

required before running GAMtools. The input required for this program is in Fastq format. This software has a variety of features and the exact commands to use...

provide flexible data compression, API access and conversion to other formats such as FASTQ. The data contained in the ENA can be accessed manually or programmatically...

version of SAM (.bam), ACE (.ace), FASTQ (.fastq) Phylogenetic trees: Newick (.nwk), PHYLIP (.phy) Other formats: Bairoch (enzymes info), HMM (HMMER...

PeaZip, an archiver supporting over 150 formats including ZPAQ streaming format extraction. fastqz, a FASTQ compressor built using libzpaq. zpaqfranz...

genomic information is mostly exchanged through a variety of data formats, such as FASTA/FASTQ for unaligned sequencing reads and SAM/BAM/CRAM for aligned reads...

human-unreadable and best portrayed in the familiar sequence row and alignment column format, of which examples are widespread in the literature. The third is necessary...

fast and flexible manner. orfipy can work with plain or gzipped FASTA and FASTQ sequences, and provides several options to fine-tune ORF searches; these...

Biopython can read and write to a number of common sequence formats, including FASTA, FASTQ, GenBank, Clustal, PHYLIP and NEXUS. When reading files, descriptive...

S2CID 252357508. Lan, Divon; Hughes, Daniel S T; Llamas, Bastien (7 July 2023). "Deep FASTQ and BAM co-compression in Genozip 15". bioRxiv. doi:10.1101/2023.07.07.548069...

provide flexible data compression, API access and conversion to other formats such as FASTQ. NCBI announced their plan to close the NCBI SRA in February 2011...

Rice PM (April 2010). "The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants". Nucleic Acids Res. 38 (6):...

Coraor, N.; Taylor, J.; Nekrutenko, A.; Galaxy, T. (2010). "Manipulation of FASTQ data with Galaxy". Bioinformatics. 26 (14): 1783–1785. doi:10.1093/bioinformatics/btq281...

Hi-C data produced by deep sequencing is in the form of a traditional FASTQ file, and the reads can be aligned to the genome of interest using sequence...

Nicholas M.; Ule, Jernej (2021). "Ultraplex: A rapid, flexible, all-in-one fastq demultiplexer". Wellcome Open Research. 6: 141. doi:10.12688/wellcomeopenres...

local DNA sequence motif search and pairwise alignment for NGS data (FASTA, FASTQ). DNA Hepperle D (www.sequentix.de) 2020 Genoogle Genoogle uses indexing...