Multiple sequence alignment (MSA) is the process or the result of sequence alignment of three or more biological sequences, generally protein, DNA, or...

In bioinformatics, a sequence alignment is a way of arranging the sequences of DNA, RNA, or protein to identify regions of similarity that may be a consequence...

of sequence alignment software is a compilation of software tools and web portals used in pairwise sequence alignment and multiple sequence alignment. See...

Clustal is a computer program used for multiple sequence alignment in bioinformatics. The software (and algorithms) have gone through several iterations...

acid or protein sequence as input, or use statistical models generated from multiple sequence alignments of known related sequences. Statistical models...

MUltiple Sequence Comparison by Log-Expectation (MUSCLE) is computer software for multiple sequence alignment of protein and nucleotide sequences. It...

Sequence logos provide a compact and informative visualization of conserved sequence and variability. Multiple sequence alignment: Multiple sequence alignment...

alignment. Pair-wise sequence alignment only compares two sequences at a time and multiple sequence alignment compares many sequences. Two important algorithms...

(for multiple alignment using fast Fourier transform) is a program used to create multiple sequence alignments of amino acid or nucleotide sequences. Published...

homologous to the sequences that were used to construct the profile-HMM. Profile-HMMs are constructed from a multiple sequence alignment in the HMMER package...

then obtain the local alignment. Multiple sequence alignment is an extension of pairwise alignment to align several sequences at a time. Different MSA...

at each position in a sequence alignment. It represents the results of multiple sequence alignments in which related sequences are compared to each other...

approaches for sequence analysis were based on sequence alignment either global or local, pairwise or multiple sequence alignment. Alignment-based approaches...

This page is a subsection of the list of sequence alignment software. Multiple alignment visualization tools typically serve four purposes: Aid general...

which multiple unrelated amino acid sequences converge on a common tertiary structure. Structural alignments can compare two sequences or multiple sequences...

2014). "AliGROOVE--visualization of heterogeneous sequence divergence within multiple sequence alignments and detection of inflated branch support". BMC...

for Alignment Evaluation) is a multiple sequence alignment software using a progressive approach. It generates a library of pairwise alignments to guide...

generate multiple sequence alignments.[page needed] This method utilizes Kmer and Kimura distances to generate multiple sequence alignments.[page needed]...

method of scoring alignments of two or more sequences. When aligning sequences, introducing gaps in the sequences can allow an alignment algorithm to match...

generalized tree alignment is the problem of producing a multiple sequence alignment and a phylogenetic tree on a set of sequences simultaneously, as...

nucleic acid secondary structures can be used to aid in multiple sequence alignment. These alignments can be made more accurate by the inclusion of secondary...

phylogenetic tree, including DNA/Amino Acid contiguous sequence assembly, multiple sequence alignment, model-test (testing best-fitting substitution models)...

Sequence graph, also called an alignment graph, breakpoint graph, or adjacency graph, are bidirected graphs used in comparative genomics. The structure...

local alignment search tool) is an algorithm and program for comparing primary biological sequence information, such as the amino-acid sequences of proteins...

Sequence Alignment Map (SAM) is a text-based format originally for storing biological sequences aligned to a reference sequence developed by Heng Li and...

the same event on the same day. Training consists of using multi-sequence alignment to generate sentence-level paraphrases from an unannotated corpus...

may be protein sequences or nucleic acid sequences, and they can contain gaps or alignment characters (see sequence alignment). Sequences are expected to...

Bauer M, Klau GW, Reinert K (July 2007). "Accurate multiple sequence-structure alignment of RNA sequences using combinatorial optimization". BMC Bioinformatics...

of multiple sequence alignments and phylogenetic trees covering many common protein domains. Pfam: database of protein domains Phylogeny Sequence alignment...

situation improves somewhat when the amino acid variation in multiple sequence alignments is taken into account. Some parts of the protein have fixed three-dimensional...