pan-genome (pangenome or supragenome) is the entire set of genes from all strains within a clade. More generally, it is the union of all the genomes of...

it was necessary to introduce the concept of pan-genomes and core genomes. Pan-genome and core genome literature also tends to have a bias towards reporting...

genomes, the pan-genome has increased as well. There is roughly a positive correlation between the number of genomes added and the growth of the pan-genome...

genetics, a genome is all the genetic information of an organism. It consists of nucleotide sequences of DNA (or RNA in RNA viruses). The nuclear genome includes...

evolution from genotype to genome to pan-genome, a concept of exploring the relationship ultimately among pan-phenome, pan-genome, and pan-envirome was proposed...

of genomes have been completely sequenced. The genome of the strain 26695 consists of about 1.7 million base pairs, with some 1,576 genes. The pan-genome...

present in all but one or some genomes under study. A bioinformatics tool BPGA can be used to characterize the Pan Genome of bacterial species. As of 2013...

Bonobo species profile San Diego Zoo Library: Bonobo, Pan paniscus View the panPan1 genome assembly in the UCSC Genome Browser. Portals:  Biology  Primates...

Ape Genome Project. In 2013 high resolution sequences were published from each of the four recognized chimpanzee subspecies: Central chimpanzee, Pan troglodytes...

A reference genome (also known as a reference assembly) is a digital nucleic acid sequence database, assembled by scientists as a representative example...

of identifying large indel based haplotypes of a gene of interest from pan-genome. Cluster analysis is the assignment of a set of observations into subsets...

has an open state pan-genome (all of the genes within a species), meaning that the pan-genome size increased as the number of genomes sequenced increased...

the Pan troglodytes genome in Ensembl Genome of Pan troglodytes (version Clint_PTRv2/panTro6), via UCSC Genome Browser Data of the genome of Pan troglodytes...

Genome projects are scientific endeavours that ultimately aim to determine the complete genome sequence of an organism (be it an animal, a plant, a fungus...

around 1% of all genes in the pan-genome. Due to the prevalence of horizontal gene transfer among bacteria, the pan-genome of B. cereus is continually expanding...

south-western China. This species was discovered during the construction of a pan-genome for the strawberry. All strawberries have a base haploid count of 7 chromosomes...

temperature adaptation. Hologenomics Hologenome theory of evolution Phytobiome Pan-genome Superorganism Brooks AW, Kohl KD, Brucker RM, van Opstal EJ, Bordenstein...

pairs of a heterozygous diploid African cassava cultivar reveal novel pan-genome and allele-specific transcriptome features". GigaScience. 11. doi:10...

of environments. Its core genome contains 2,164 genes, out of 4,711 genes in total (the pan-genome). The accessory genome is overtaken by genes encoding...

C, Thomson NR, Weill FX, Ho SY, Gilbert MT, Achtman M (August 2018). "Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic...

"To Start Building 'Human Pan-Genome,' BGI De Novo Assembles Two Genomes from Illumina Data | In Sequence | Sequencing | GenomeWeb". 8 December 2009. Archived...

PV, Whitaker RJ (May 2009). "Biogeography of the Sulfolobus islandicus pan-genome". Proceedings of the National Academy of Sciences of the United States...

performed pan-cancer analysis on exomes and the whole genomes of cancers, the latter including their non-coding regions. In 2018, The Cancer Genome Atlas...

respectively. Functional classification of Bifidobacterium genes, including the pan-genome of this genus, revealed that 13.7% of the identified bifidobacterial genes...

Jiajun Lei, and Ticao Zhang (2021-11-09). "Evolutionary history and pan-genome dynamics of strawberry (Fragaria spp.)". National Academy of Sciences...

list of sequenced eubacterial genomes contains most of the eubacteria known to have publicly available complete genome sequences. Most of these sequences...

plant health. These have revolutionised microbial ecology. The analysis of genomes and metagenomes in a high-throughput manner now provide highly effective...

Sheppard, Samuel K.; Bereswill, Stefan (27 March 2014). "A Reference Pan-Genome Approach to Comparative Bacterial Genomics: Identification of Novel Epidemiological...

Microbial cooperation Metagenomics viral Metatranscriptomics Metabolomics Pan-genome Superorganism Symbiogenesis Projects Human Microbiome Project Earth Microbiome...

Pseudomonas aeruginosa Pan-Genome Provides New Insights on Its Population Structure, Horizontal Gene Transfer, and Pathogenicity". Genome Biology and Evolution...