Jonathan Eisen originally coined phylogenomics, it applied to prediction of gene function. Before the use of phylogenomic techniques, predicting gene function...

Shiratori T, Ishida KI, Hashimoto T, Simpson A, Roger A (19 January 2018). "Phylogenomics Places Orphan Protistan Lineages in a Novel Eukaryotic Super-Group"...

057. PMID 31211983. S2CID 189926344. Misof, Bernhard; et al. (2014). "Phylogenomics resolves the timing and pattern of insect evolution". Science. 346 (6210):...

et al. (2022). "The closest lineage of Archaeplastida is revealed by phylogenomics analyses that include Microheliella maris". Open Biology. 12 (210376):...

Carpenter, E.; et al. (2019). "One thousand plant transcriptomes and the phylogenomics of green plants". Nature. 574 (7780): 679–685. doi:10.1038/s41586-019-1693-2...

Zwick, Andreas; Reis, Mario dos; Barber, Jesse R. (5 November 2019). "Phylogenomics reveals the evolutionary timing and pattern of butterflies and moths"...

Li, Yan-Da; Engel, Michael S.; Tihelka, Erik; Cai, Chenyang (2023). "Phylogenomics of weevils revisited: data curation and modelling compositional heterogeneity"...

Ayaka; Kume, Keitaro; Hashimoto, Tetsuo; Inagaki, Yuji (2021-08-31). "Phylogenomics invokes the clade housing Cryptista, Archaeplastida, and Microheliella...

Herlyn, Holger; Hankeln, Thomas (2014). "Platyzoan Paraphyly Based on Phylogenomic Data Supports a Noncoelomate Ancestry of Spiralia". Molecular Biology...

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Gloria; Desalle, Rob (2011). Sanderson, Michael J (ed.). "A Functional Phylogenomic View of the Seed Plants". PLOS Genetics. 7 (12): e1002411. doi:10.1371/journal...

Carpenter, E.; et al. (2019). "One thousand plant transcriptomes and the phylogenomics of green plants". Nature. 574 (7780): 679–685. doi:10.1038/s41586-019-1693-2...

base of Bilateria. Centroneuralia, as a proposed clade, originates in phylogenomics. More precisely, recent studies correlate support for Deuterostomia...

proposed group of protists made up of centrohelids and haptophytes. Phylogenomic studies indicate that Haptista, together with Ancoracysta twista, forms...

present backbone classification of gastropods relies on the results of phylogenomic analyses. Consensus has not been reached yet considering the relationships...

D.; Heiss, A.A.; Lang, B.F.; Simpson, A.G.B.; Roger, A.J. (2013). "Phylogenomics demonstrates that breviate flagellates are related to opisthokonts and...

López-Legentil S, Piette J, Lemaire P, Douzery EJ (April 2018). "A phylogenomic framework and timescale for comparative studies of tunicates". BMC Biology...

(geographic distribution). Ware was a contributor to a major study of the phylogenomics of insect evolution, and developed molecular phylogeny of hexapoda....

are united by the possession of two rows of cilia, called kineties. Phylogenomic analysis shows that Hemimastigophora are a distinct and ancient lineage...

conceptual and practical considerations, and between phenotype and phylogenomics". Fungal Diversity. 109 (1): 99–154. doi:10.1007/s13225-021-00477-7...

Morgenstern, Burkhard; Wörheide, Gert; Manuel, Michaël (April 2009). "Phylogenomics Revives Traditional Views on Deep Animal Relationships". Current Biology...

2021). "An updated tribal classification of Lamiaceae based on plastome phylogenomics". BMC Biology. 19 (1): 2. doi:10.1186/s12915-020-00931-z. PMC 7796571...

of all eukaryotic diversity. Owing to the clade's discovery through phylogenomics, there are no known synapomorphies uniting its various members. This...

Maximilian J. (2010). "A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata". Proceedings...

Meritxell; Chaplin, Mark A.; Del Campo, Javier; et al. (September 2015). "Phylogenomics Reveals Convergent Evolution of Lifestyles in Close Relatives of Animals...

2023. Liu, Shuiyin; Yang, Yingying; Tian, Qin; et al. (28 April 2023), Phylogenomic Analyses Reveal Widespread Gene Flow During the Early Radiation of Oaks...

Chien‐Hsun; Ma, Hong; Qian, Guan‐Ze; Hong, De‐Yuan; Wen, Jun (May 2022). "Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization...

et al. (2022). "A species-level timeline of mammal evolution integrating phylogenomic data". Nature. 602 (7896): 263–267. Bibcode:2022Natur.602..263A. doi:10...

internal phylogeny of solifuges was resolved for the first time using phylogenomics. The molecular phylogeny of the order showed evidence for two groups...