In bioinformatics, a sequence alignment is a way of arranging the sequences of DNA, RNA, or protein to identify regions of similarity that may be a consequence...

Multiple sequence alignment (MSA) is the process or the result of sequence alignment of three or more biological sequences, generally protein, DNA, or...

of sequence alignment software is a compilation of software tools and web portals used in pairwise sequence alignment and multiple sequence alignment. See...

Sequence Alignment Map (SAM) is a text-based format originally for storing biological sequences aligned to a reference sequence developed by Heng Li and...

another. In sequence alignments of proteins, the degree of similarity between amino acids occupying a particular position in the sequence can be interpreted...

acid or protein sequence as input, or use statistical models generated from multiple sequence alignments of known related sequences. Statistical models...

areas of the life sciences. This includes visualization of sequences, genomes, alignments, phylogenies, macromolecular structures, systems biology, microscopy...

unrecognizable. The first sequence assemblers began to appear in the late 1980s and early 1990s as variants of simpler sequence alignment programs to piece together...

local alignment search tool) is an algorithm and program for comparing primary biological sequence information, such as the amino-acid sequences of proteins...

Alignment Map (BAM) is the comprehensive raw data of genome sequencing; it consists of the lossless, compressed binary representation of the Sequence...

techniques that provide the sequence comparisons (sequence alignment) and analyze the alignment product to understand its biology. Sequence analysis in molecular...

bioinformatics, alignment-free sequence analysis approaches to molecular sequence and structure data provide alternatives over alignment-based approaches...

MUltiple Sequence Comparison by Log-Expectation (MUSCLE) is computer software for multiple sequence alignment of protein and nucleotide sequences. It is...

performs local sequence alignment; that is, for determining similar regions between two strings of nucleic acid sequences or protein sequences. Instead of...

Clustal is a computer program used for multiple sequence alignment in bioinformatics. The software (and algorithms) have gone through several iterations...

acid sequences converge on a common tertiary structure. Structural alignments can compare two sequences or multiple sequences. Because these alignments rely...

protein molecules Sequence alignment, in bioinformatics, arranging the sequences of DNA, RNA, or protein to identify similarities Alignment program, software...

matrix used for sequence alignment of proteins. BLOSUM matrices are used to score alignments between evolutionarily divergent protein sequences. They are based...

the pairwise distances between two sequences in sequence space. They are used in structural and sequential alignment, and for the determination of protein...

method of scoring alignments of two or more sequences. When aligning sequences, introducing gaps in the sequences can allow an alignment algorithm to match...

multiple alignment using fast Fourier transform) is a program used to create multiple sequence alignments of amino acid or nucleotide sequences. Published...

This page is a subsection of the list of sequence alignment software. Multiple alignment visualization tools typically serve four purposes: Aid general...

of the query sequence, and on the production of an alignment that maps residues in the query sequence to residues in the template sequence. It has been...

at each position in a sequence alignment. It represents the results of multiple sequence alignments in which related sequences are compared to each other...

Maq). In an effort to reduce the memory requirement for sequence alignment, several alignment programs were developed (Bowtie, BWA, and SOAP2) that use...

with and post-processing short DNA sequence read alignments in the SAM (Sequence Alignment/Map), BAM (Binary Alignment/Map) and CRAM formats, written by...

BLAST sequence alignment program and a widely respected figure in bioinformatics. NCBI had responsibility for making available the GenBank DNA sequence database...

homologous to the sequences that were used to construct the profile-HMM. Profile-HMMs are constructed from a multiple sequence alignment in the HMMER package...

changes from a common ancestral sequence. Alignments of multiple sequences are used to indicate which regions of each sequence are homologous. The term "percent...

(September 2006). "Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints". BMC Bioinformatics. 7 (1): 400. doi:10.1186/1471-2105-7-400...