bioinformatics, a sequence database is a type of biological database that is composed of a large collection of computerized ("digital") nucleic acid sequences, protein... 9 KB (1,041 words) - 13:59, 26 June 2023 |
Nucleotide Sequence Database Collaboration (INSDC) consists of a joint effort to collect and disseminate databases containing DNA and RNA sequences. It involves... 5 KB (462 words) - 07:43, 19 January 2024 |
between them. These three databases are primary databases, as they house original sequence data. They collaborate with Sequence Read Archive (SRA), which... 37 KB (2,874 words) - 20:13, 14 March 2024 |
GenBank (redirect from GenBank database) The GenBank sequence database is an open access, annotated collection of all publicly available nucleotide sequences and their protein translations. It... 16 KB (1,462 words) - 07:39, 4 April 2024 |
The On-Line Encyclopedia of Integer Sequences (OEIS) is an online database of integer sequences. It was created and maintained by Neil Sloane while researching... 45 KB (5,561 words) - 14:24, 3 March 2024 |
National Center for Biotechnology Information (redirect from NCBI taxonomy database) sequences and PubMed, a bibliographic database for biomedical literature. Other databases include the NCBI Epigenomics database. All these databases are... 11 KB (1,236 words) - 10:03, 7 April 2024 |
sequences and structures. Biological databases can be classified by the kind of data they collect (see below). Broadly, there are molecular databases... 14 KB (1,552 words) - 13:09, 1 February 2024 |
(identical) sequences CluSTr: A single-linkage protein sequence clustering database from Smith-Waterman sequence similarities; covers over 7 mln sequences including... 10 KB (969 words) - 03:51, 3 December 2023 |
European Nucleotide Archive (category Genetics databases) is composed of three main databases: the Sequence Read Archive, the Trace Archive and the EMBL Nucleotide Sequence Database (also known as EMBL-bank)... 24 KB (2,294 words) - 10:10, 3 December 2023 |
contain sequence information and some databases even provide means for performing sequence based queries, the primary attribute of a structure database is... 7 KB (756 words) - 10:13, 3 January 2024 |
nucleotide sequence (called a query) with a library or database of sequences, and identify database sequences that resemble the query sequence above a certain... 40 KB (5,237 words) - 02:03, 26 April 2024 |
Reference genome (redirect from Human Reference Sequence) genome (also known as a reference assembly) is a digital nucleic acid sequence database, assembled by scientists as a representative example of the set of... 39 KB (3,338 words) - 00:33, 10 March 2024 |
fragments.[citation needed] Thus, sequence database searching faces a bottleneck of limited specificity. Sequence database searching also demands vast search... 6 KB (787 words) - 17:51, 27 January 2024 |
UniProt (category Biological databases) UniProt is a freely accessible database of protein sequence and functional information, many entries being derived from genome sequencing projects. It... 21 KB (1,849 words) - 23:51, 27 April 2024 |
Barcode of Life Data System (category Biological databases) needed to gain BARCODE designation in the international nucleotide sequence databases. Because of its web-based delivery and flexible data security model... 4 KB (435 words) - 04:57, 26 September 2023 |
List of mass spectrometry software (redirect from MassBank (database)) broad classes: database search and de novo search. The former search takes place against a database containing all amino acid sequences assumed to be present... 80 KB (3,936 words) - 07:03, 29 April 2024 |
Fibonacci sequence is a sequence in which each number is the sum of the two preceding ones. Numbers that are part of the Fibonacci sequence are known... 85 KB (12,887 words) - 19:10, 30 April 2024 |
DNA Data Bank of Japan (category Genome databases) The DNA Data Bank of Japan (DDBJ) is a biological database that collects DNA sequences. It is located at the National Institute of Genetics (NIG) in the... 4 KB (343 words) - 06:06, 19 February 2024 |
Entrez (category Online databases) access to all databases simultaneously with a single query string and user interface. Entrez can efficiently retrieve related sequences, structures, and... 6 KB (742 words) - 22:56, 1 December 2023 |
Nucleotide Sequence Database Collaboration, a public database which can be searched on the web. A few of the listed genomes may not be in the INSDC database, but... 185 KB (8,937 words) - 22:53, 3 April 2024 |
list of sequence alignment software is a compilation of software tools and web portals used in pairwise sequence alignment and multiple sequence alignment... 69 KB (2,355 words) - 16:05, 21 January 2024 |
PSSRdb (Polymorphic Simple Sequence Repeats database) is a database of polymorphic simple sequence repeats sequence repeats Kumar, Pankaj; Chaitanya Pasumarthy... 1 KB (66 words) - 17:51, 7 February 2022 |
(including drawings, sketches and illustrations) animation sequences, audio and video. A Multimedia Database Management System (MMDBMS) is a framework that manages... 6 KB (679 words) - 03:37, 15 July 2022 |
Nucleic acid (section Sequences) laboratories worldwide. In addition to maintaining the GenBank nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides... 23 KB (2,743 words) - 21:48, 29 March 2024 |
identifier given to a biological polymer sequence (DNA, protein) when it is submitted to a sequence database Accession number (cultural property), a unique... 332 bytes (75 words) - 13:15, 2 August 2023 |